| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812709
Identifier: 237812709
GI number: 237812709
Start: 2406563
End: 2408026
Strand: Reverse
Name: 237812709
Synonym: GBP346_A2462
Alternate gene names: NA
Gene position: 2408026-2406563 (Counterclockwise)
Preceding gene: 237812710
Following gene: 237812708
Centisome position: 58.75
GC content: 69.47
Gene sequence:
>1464_bases ATGAGCGATTCGAGGACGCCCGGGCGGCCCCCGGCGAAGCCGCAGCGGATGCCGGCGGCGATGCAGACCCTGCTCGATGC GGACGACGCGCGCTTTCTGCTGACGCGCACCGGCTTTTCGCCGCCGCCGCGCGCGCTCGCGCGCTTCGTCGGCATGACGC GCGCGCAGGCGCTCGCCGAACTGCTCGACGGCGCCCGCACGCAAAGCGTGACGCCGCCGCCCGACTGGGTGCGCGAGCCG CCGCCGTCGCGCGCGATGCGCGCCGCGTTCTCGCCGGACGAGCGGCGCGCGGAACAACAGCTTCGCAATCGCCGCTACGA CGAGCTGCGCGCATGGTGGGTGCGCGAGATGATCGTGACGACTTCGCCGCTCGCCGAGCGCATGACGCTCTTCTGGCACA ACCACTTCACGTCCGGCCAGGACAAGGTACCGTTTCCGCAAACGATTGCGGCTCAGCATGCGCTGCTGCGCGCCAACGCG CTCGGCAATTTCGGCGCGATGCTGCACGGCGTCGCGAAGGATCCGGCGATGCTGCAGTATCTCGATGGCGCGAGCAATCG CAAGGGCCGCCCGAACGAGAATTTCGCGCGCGAGGCGATGGAACTTTTCACGCTCGGCGAAGGCCACTATACGCAGCGCG ACGTGTCCGAGGCCGCGCGCGCGTACACCGGCTGGGGACTCGATCCCGATGCGCTCACGTACGTGTTCCGGCCGAACGTT CACGACGACGGCGTGAAGACCGTGCTCGGCGAAACCGGGCGCTTCGATGGCGATGCGGTGCTCGACATCCTGCTCGGGCG CCCCGAGACCGCGCGCTTCGTCGTCGCGAAGCTGTGGCGCGAATTCGTCTCCGATGCGCCGGATGCGGGCGAGGTCGAGC GCATCGCCGCGCGCTTGCGGCAGAGCGATTACGACATCCGCGCGGCGCTCACGGAGCTGTTTTCGTCCGACGCATTCTGG GCCGAGCGCAACCGCGGCGTGCTCGTCAAGTCGCCGGCGGAATTCGTGGTCGGCACGGTGAGGCTGTTCGACGTCGATTA CACCGATGCCGCGCCGTTCGCAAACACGTTGCGCGCGCTGGGGCAGAACCTGTTCTATCCGCCGAACGTGAAGGGCTGGC CGGGCGGCGTGAGCTGGATCAACAGCGCGACGCTGCTTGCGCGCAAGCAGTTCGTCGAGCAGATGATGCGCGCGACCGAG GCGCCCGGCATGCGTGCGGCGCCCGCTTCCCGCGACATGGCGGGCCAGCCGGCGCCGACGCGGCGCGGCGCGATGCGCTT CGATCTCGACGCGTGGCTTGCCGCGTACCGGACGAAGCCGCAGGCGCAGCCGGATCTGTCGACGGAGCTGCAACTGCAGC ACGCGGTGCTGCCGATTTCGCCGGTCGCGGCGATCGAGGCGGGGGCGACGAGCGGCGCGTATTTGCAGGCCCTGTTGATG GACCCGGCGTATCAACTGAAGTGA
Upstream 100 bases:
>100_bases TCGTCAACTGCGCGCCGCCGCGAGCCGTTGAATCGCCATCACGGATGGCCTCGCGCATCGCGAGCCGGCGTGGCTTGCCT CTTTCGGAGAACGGTCGACG
Downstream 100 bases:
>100_bases AGAACATGAACACGATGACGATGAGACTCCGCGCGATGCGGCGTTGCGCGGGCCGCGTCGAATGCGAAACGAGGAAGGCA GCATGAAACGACGTGATTTT
Product: DNA-directed DNA polymerase B
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MSDSRTPGRPPAKPQRMPAAMQTLLDADDARFLLTRTGFSPPPRALARFVGMTRAQALAELLDGARTQSVTPPPDWVREP PPSRAMRAAFSPDERRAEQQLRNRRYDELRAWWVREMIVTTSPLAERMTLFWHNHFTSGQDKVPFPQTIAAQHALLRANA LGNFGAMLHGVAKDPAMLQYLDGASNRKGRPNENFAREAMELFTLGEGHYTQRDVSEAARAYTGWGLDPDALTYVFRPNV HDDGVKTVLGETGRFDGDAVLDILLGRPETARFVVAKLWREFVSDAPDAGEVERIAARLRQSDYDIRAALTELFSSDAFW AERNRGVLVKSPAEFVVGTVRLFDVDYTDAAPFANTLRALGQNLFYPPNVKGWPGGVSWINSATLLARKQFVEQMMRATE APGMRAAPASRDMAGQPAPTRRGAMRFDLDAWLAAYRTKPQAQPDLSTELQLQHAVLPISPVAAIEAGATSGAYLQALLM DPAYQLK
Sequences:
>Translated_487_residues MSDSRTPGRPPAKPQRMPAAMQTLLDADDARFLLTRTGFSPPPRALARFVGMTRAQALAELLDGARTQSVTPPPDWVREP PPSRAMRAAFSPDERRAEQQLRNRRYDELRAWWVREMIVTTSPLAERMTLFWHNHFTSGQDKVPFPQTIAAQHALLRANA LGNFGAMLHGVAKDPAMLQYLDGASNRKGRPNENFAREAMELFTLGEGHYTQRDVSEAARAYTGWGLDPDALTYVFRPNV HDDGVKTVLGETGRFDGDAVLDILLGRPETARFVVAKLWREFVSDAPDAGEVERIAARLRQSDYDIRAALTELFSSDAFW AERNRGVLVKSPAEFVVGTVRLFDVDYTDAAPFANTLRALGQNLFYPPNVKGWPGGVSWINSATLLARKQFVEQMMRATE APGMRAAPASRDMAGQPAPTRRGAMRFDLDAWLAAYRTKPQAQPDLSTELQLQHAVLPISPVAAIEAGATSGAYLQALLM DPAYQLK >Mature_486_residues SDSRTPGRPPAKPQRMPAAMQTLLDADDARFLLTRTGFSPPPRALARFVGMTRAQALAELLDGARTQSVTPPPDWVREPP PSRAMRAAFSPDERRAEQQLRNRRYDELRAWWVREMIVTTSPLAERMTLFWHNHFTSGQDKVPFPQTIAAQHALLRANAL GNFGAMLHGVAKDPAMLQYLDGASNRKGRPNENFAREAMELFTLGEGHYTQRDVSEAARAYTGWGLDPDALTYVFRPNVH DDGVKTVLGETGRFDGDAVLDILLGRPETARFVVAKLWREFVSDAPDAGEVERIAARLRQSDYDIRAALTELFSSDAFWA ERNRGVLVKSPAEFVVGTVRLFDVDYTDAAPFANTLRALGQNLFYPPNVKGWPGGVSWINSATLLARKQFVEQMMRATEA PGMRAAPASRDMAGQPAPTRRGAMRFDLDAWLAAYRTKPQAQPDLSTELQLQHAVLPISPVAAIEAGATSGAYLQALLMD PAYQLK
Specific function: Unknown
COG id: COG5267
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54002; Mature: 53871
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSRTPGRPPAKPQRMPAAMQTLLDADDARFLLTRTGFSPPPRALARFVGMTRAQALAE CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH LLDGARTQSVTPPPDWVREPPPSRAMRAAFSPDERRAEQQLRNRRYDELRAWWVREMIVT HHCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH TSPLAERMTLFWHNHFTSGQDKVPFPQTIAAQHALLRANALGNFGAMLHGVAKDPAMLQY CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH LDGASNRKGRPNENFAREAMELFTLGEGHYTQRDVSEAARAYTGWGLDPDALTYVFRPNV HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHEEEEECCCC HDDGVKTVLGETGRFDGDAVLDILLGRPETARFVVAKLWREFVSDAPDAGEVERIAARLR CCCHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH QSDYDIRAALTELFSSDAFWAERNRGVLVKSPAEFVVGTVRLFDVDYTDAAPFANTLRAL HCCCHHHHHHHHHHCCCCHHHHCCCCEEEECCHHHHEEEEEEEECCCCCCCHHHHHHHHH GQNLFYPPNVKGWPGGVSWINSATLLARKQFVEQMMRATEAPGMRAAPASRDMAGQPAPT HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC RRGAMRFDLDAWLAAYRTKPQAQPDLSTELQLQHAVLPISPVAAIEAGATSGAYLQALLM CCCCEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHH DPAYQLK CCHHCCC >Mature Secondary Structure SDSRTPGRPPAKPQRMPAAMQTLLDADDARFLLTRTGFSPPPRALARFVGMTRAQALAE CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH LLDGARTQSVTPPPDWVREPPPSRAMRAAFSPDERRAEQQLRNRRYDELRAWWVREMIVT HHCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH TSPLAERMTLFWHNHFTSGQDKVPFPQTIAAQHALLRANALGNFGAMLHGVAKDPAMLQY CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH LDGASNRKGRPNENFAREAMELFTLGEGHYTQRDVSEAARAYTGWGLDPDALTYVFRPNV HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHEEEEECCCC HDDGVKTVLGETGRFDGDAVLDILLGRPETARFVVAKLWREFVSDAPDAGEVERIAARLR CCCHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH QSDYDIRAALTELFSSDAFWAERNRGVLVKSPAEFVVGTVRLFDVDYTDAAPFANTLRAL HCCCHHHHHHHHHHCCCCHHHHCCCCEEEECCHHHHEEEEEEEECCCCCCCHHHHHHHHH GQNLFYPPNVKGWPGGVSWINSATLLARKQFVEQMMRATEAPGMRAAPASRDMAGQPAPT HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC RRGAMRFDLDAWLAAYRTKPQAQPDLSTELQLQHAVLPISPVAAIEAGATSGAYLQALLM CCCCEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHH DPAYQLK CCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA