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The map label for this gene is hpnD_1 [H]

Identifier: 237812707

GI number: 237812707

Start: 2404344

End: 2405186

Strand: Direct

Name: hpnD_1 [H]

Synonym: GBP346_A2460

Alternate gene names: 237812707

Gene position: 2404344-2405186 (Clockwise)

Preceding gene: 237812704

Following gene: 237812712

Centisome position: 58.66

GC content: 70.11

Gene sequence:

>843_bases
GTGAATTTCGACGAATACTGCCAGCAGAAAGCCGCGCCGCCCGGCTCCAGTTTTTACTATGCGCTGCGCCAGGCGCCGCT
CGCGCGCCAGCCGCTCGTCGCCGCGCTGTTCGCGCTGCGTCGCGAGCTCGAGCAAACGGTGAAGGAAGTCAGCGATCCGA
CCGTCGGCCACACCAAGCTCGCGTGGTGGCAAAAGGAGCTCGCCGCGCTCGCATCCGGCCATCCGTCGCATCCGGTGTCG
CAAGCGCTCGCCGCGCATCATCCGGACATCGCGCGCGAAACCGATGCGCTGCGCACGCTCGTCGCCGGTTACGGAATGGA
CCTCGAGCAGGCGCGCTATCTGGACTTCGCGAACCTGCGCCGTTACGCCGATCAAACGGGCGGCATGTTCGCCGCGCTCG
TCGCAAGCGCAAGCGCCAGCGCCGGCCGGCCCACCGCGAACGGCGCGCGCTGGGCGCAGCCGCTCGGCCAGGCGCTCACG
CTCGCGCAATTCGTGCAGGATCTCGGGCAGGATGCGCGGCAGGGCCGCATCTACGTGCCGATCGACGAGTTGCAACGCTA
CGGCGTGACGGCCGCCGATCTCCTCAACCGCCGCTACAGCCCCGCCTACACCGAGCTGATGCGCTTCCAGACGTCACGCG
CGCGCGACGCACTCAACGCGTCGCTATCCGGCATTCCCGCCGACGAGCGGCGCGCGCAGCGCACGCTGCGCGCGCTCGGC
GCGCTCGCGCTCGCGGTGCTCGACGAGATCGAGCGCGACGGCTTTCAGGTGCTGCATCAGCGGATCGCGCTCACGCCGAT
CCGCAAGCTGTGGATCGCATGGCGCGCCGCGCGGCGCCGCTGA

Upstream 100 bases:

>100_bases
CTAGAATTCGCCGTTGTCGCCGCAACATGGCGCGATGCCGGGCCGTCCAGCGCCCGCGCTCCCCGCGCCGAGCCGATCCC
GCCTCACTCGTTCCGTCCCC

Downstream 100 bases:

>100_bases
CGCGCGCCGCCCTCCGCCGCGCACGCCCCGCTCCCGCGTATCAGGCGCGCAGCAACGGCAGCGGCTCGAAACGCTGCCTG
AGCACACTCGCCGCGTCGAG

Product: squalene synthase HpnD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MNFDEYCQQKAAPPGSSFYYALRQAPLARQPLVAALFALRRELEQTVKEVSDPTVGHTKLAWWQKELAALASGHPSHPVS
QALAAHHPDIARETDALRTLVAGYGMDLEQARYLDFANLRRYADQTGGMFAALVASASASAGRPTANGARWAQPLGQALT
LAQFVQDLGQDARQGRIYVPIDELQRYGVTAADLLNRRYSPAYTELMRFQTSRARDALNASLSGIPADERRAQRTLRALG
ALALAVLDEIERDGFQVLHQRIALTPIRKLWIAWRAARRR

Sequences:

>Translated_280_residues
MNFDEYCQQKAAPPGSSFYYALRQAPLARQPLVAALFALRRELEQTVKEVSDPTVGHTKLAWWQKELAALASGHPSHPVS
QALAAHHPDIARETDALRTLVAGYGMDLEQARYLDFANLRRYADQTGGMFAALVASASASAGRPTANGARWAQPLGQALT
LAQFVQDLGQDARQGRIYVPIDELQRYGVTAADLLNRRYSPAYTELMRFQTSRARDALNASLSGIPADERRAQRTLRALG
ALALAVLDEIERDGFQVLHQRIALTPIRKLWIAWRAARRR
>Mature_280_residues
MNFDEYCQQKAAPPGSSFYYALRQAPLARQPLVAALFALRRELEQTVKEVSDPTVGHTKLAWWQKELAALASGHPSHPVS
QALAAHHPDIARETDALRTLVAGYGMDLEQARYLDFANLRRYADQTGGMFAALVASASASAGRPTANGARWAQPLGQALT
LAQFVQDLGQDARQGRIYVPIDELQRYGVTAADLLNRRYSPAYTELMRFQTSRARDALNASLSGIPADERRAQRTLRALG
ALALAVLDEIERDGFQVLHQRIALTPIRKLWIAWRAARRR

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 31089; Mature: 31089

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFDEYCQQKAAPPGSSFYYALRQAPLARQPLVAALFALRRELEQTVKEVSDPTVGHTKL
CCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
AWWQKELAALASGHPSHPVSQALAAHHPDIARETDALRTLVAGYGMDLEQARYLDFANLR
HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RYADQTGGMFAALVASASASAGRPTANGARWAQPLGQALTLAQFVQDLGQDARQGRIYVP
HHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
IDELQRYGVTAADLLNRRYSPAYTELMRFQTSRARDALNASLSGIPADERRAQRTLRALG
HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ALALAVLDEIERDGFQVLHQRIALTPIRKLWIAWRAARRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNFDEYCQQKAAPPGSSFYYALRQAPLARQPLVAALFALRRELEQTVKEVSDPTVGHTKL
CCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
AWWQKELAALASGHPSHPVSQALAAHHPDIARETDALRTLVAGYGMDLEQARYLDFANLR
HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RYADQTGGMFAALVASASASAGRPTANGARWAQPLGQALTLAQFVQDLGQDARQGRIYVP
HHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
IDELQRYGVTAADLLNRRYSPAYTELMRFQTSRARDALNASLSGIPADERRAQRTLRALG
HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ALALAVLDEIERDGFQVLHQRIALTPIRKLWIAWRAARRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA