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The map label for this gene is rpoE [H]

Identifier: 237812615

GI number: 237812615

Start: 2325286

End: 2325993

Strand: Reverse

Name: rpoE [H]

Synonym: GBP346_A2365

Alternate gene names: 237812615

Gene position: 2325993-2325286 (Counterclockwise)

Preceding gene: 237812619

Following gene: 237812614

Centisome position: 56.75

GC content: 71.89

Gene sequence:

>708_bases
GTGGGTCAATTCGGCCGGGCGGTCGACGAACATGGCGCGGACGCCGCGCACGGCAGCGATCGGACGGCCGGCGCGGCCGC
CGACGCGGCGGCGCGCGGCGAGCGTTTTCGCGCGCTCGCGCTGCCGCATCTGGACGCCGCATACAACCTCGCGCGCTGGC
TGTGCGGCAATTCGAGCGACGCGGACGACGTCGTGCAGGAGGCGTGCATGCGCGCGTTGCGCTTTCTCGATTCGTGCCGC
GGCGACAACGCGCGGCCGTGGCTGCTGACGATCGTGCGCCATACCTGGTACAGCGAATGGCGGCGGCGGGCGAACGCGCA
CGAAGTGGCCGCCGACGCGCTCGACGCGGCCGATTCGACGGACGATTGGCATCCGGCGGTGGAGGACCCGCTCGCGCTTC
TTTTGCGCAGTGAAGACGCGCATCGCGTGAACGCCGCGCTCGCGAAGCTGCCGCCCGAATATCGGGAGGTGCTCGTTTTG
CGCGAAATGGAGGACATGAGTTACCGCGAGATTGCGGCAATCGCGGACCTGCCGGTCGGGACGGTGATGTCGCGGCTCGC
ACGGGCGCGGCGGCGGTTCGCGGCGACGCTCGGCGGCGCGCCCGCGTCGCGGTCGGCCGCGCAGGTGTATCCGGGCGAGC
GCGCGGCGCAGCGCGAACGCGGCGCGCCGGCATCCGGAACCGCATCGGAGGCCATCGATGGACTGTAA

Upstream 100 bases:

>100_bases
CGACGGGCGGTAAGGATGCCTGAGCGCATGCGCGCCGTGATCGGCGGCGTGCGTCGGACGCAAGCGGCCGGCGGGCGGCC
GCGCATCGCGGGGAGGCGAC

Downstream 100 bases:

>100_bases
CGAAACGCGTGCGCTGCTCGGCGCGGATGTCGACCACGAGCTTTCCGCGGCCGATGCGTGGCGGATCGCGCGGCACGTCG
GCGGGTGCGGCGCGTGCCGT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MGQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSDADDVVQEACMRALRFLDSCR
GDNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADSTDDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVL
REMEDMSYREIAAIADLPVGTVMSRLARARRRFAATLGGAPASRSAAQVYPGERAAQRERGAPASGTASEAIDGL

Sequences:

>Translated_235_residues
MGQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSDADDVVQEACMRALRFLDSCR
GDNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADSTDDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVL
REMEDMSYREIAAIADLPVGTVMSRLARARRRFAATLGGAPASRSAAQVYPGERAAQRERGAPASGTASEAIDGL
>Mature_234_residues
GQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSDADDVVQEACMRALRFLDSCRG
DNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADSTDDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVLR
EMEDMSYREIAAIADLPVGTVMSRLARARRRFAATLGGAPASRSAAQVYPGERAAQRERGAPASGTASEAIDGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=138, Percent_Identity=40.5797101449275, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 25455; Mature: 25323

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSD
CCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
ADDVVQEACMRALRFLDSCRGDNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADST
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
DDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVLREMEDMSYREIAAIADLPVG
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TVMSRLARARRRFAATLGGAPASRSAAQVYPGERAAQRERGAPASGTASEAIDGL
HHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
GQFGRAVDEHGADAAHGSDRTAGAAADAAARGERFRALALPHLDAAYNLARWLCGNSSD
CCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
ADDVVQEACMRALRFLDSCRGDNARPWLLTIVRHTWYSEWRRRANAHEVAADALDAADST
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
DDWHPAVEDPLALLLRSEDAHRVNAALAKLPPEYREVLVLREMEDMSYREIAAIADLPVG
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TVMSRLARARRRFAATLGGAPASRSAAQVYPGERAAQRERGAPASGTASEAIDGL
HHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]