| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812614
Identifier: 237812614
GI number: 237812614
Start: 2324286
End: 2325296
Strand: Reverse
Name: 237812614
Synonym: GBP346_A2364
Alternate gene names: NA
Gene position: 2325296-2324286 (Counterclockwise)
Preceding gene: 237812615
Following gene: 237812613
Centisome position: 56.73
GC content: 74.78
Gene sequence:
>1011_bases ATGGACTGTAACGAAACGCGTGCGCTGCTCGGCGCGGATGTCGACCACGAGCTTTCCGCGGCCGATGCGTGGCGGATCGC GCGGCACGTCGGCGGGTGCGGCGCGTGCCGTCTCGAGCGCGAGCGGCTCGTCGCGCTTCGCCGCGCGATGCGGCAGGCGG AGTACCATCGCGCGCCGGGCGCGCTGCGCGCCCGCATTGCCGCGGGCTTGCCGTTGGCGGCGGCGCCGTTCGCGCAAGCG CCGGTTCAGGATCTGCCCGCTTCGGACGTGCCGGTTTCGGACGTGCCGGTCTCGGATGCGCCTGAACAGGACACGCCCTC GCAGGACATGCGCGCGCCCAACAAACCGGCGGTGGATCGCCCGCCCGAAGCGAAGCCGATGTTCGGCGCCGACGCGCGCG GCGGCGCGCGGGCGGGCCGCTGGTTCGCGCGGCCGGGCTCGCGCGGCCCGACGCTTGATCGGCCGGGGCCGGGGCCGGGG CCGCGCGCCGCGGCGCTGCCCGGCCTGGGCTGGGGCGTCGCGCTGACGGTCGCGCTGGCGGCTGCGGCCGGCTTCGCGCT CGATGCGCGCCGCGCGGCGACGGAGCACGCCGTCGACGAAATCGTCGCGAGCCACGTGCGAGCCGGGCTGTCGTCACGGG ACATCGACGTGATCTCGACCGATCGCCATACCGTCAAGCCGTGGTTCAACGGCCGCCTCGATTTCGCGCCACCCGTCGTC GACCTGAGCGCAAGCGGCTTCGCGCTGGCGGGCGGCCGGCTCGACTATGTCGGGCAGCGCCGCGTCGCGGTGCTCGTCTA CCGCTACCGGCAGCATGTGATCGACGTCTACGTGTGGCCGTCGGGCGAGGGCGGGGCGAGGCCCTACGCGACCGTGTCGC AGGGTTATGCGCTCGATCGCTGGGAGGCGGCCGGCATGACGTGGTGGGCGGTAACCGACGCGGAGCCGTCCGCGCTCGCG GCGTTCAGGACGGCGCTCGATGCGCGCGTGGCCGCGCCGCGAACCGAGTGA
Upstream 100 bases:
>100_bases GCGCCCGCGTCGCGGTCGGCCGCGCAGGTGTATCCGGGCGAGCGCGCGGCGCAGCGCGAACGCGGCGCGCCGGCATCCGG AACCGCATCGGAGGCCATCG
Downstream 100 bases:
>100_bases CGGCGTTTTGGCGATGCGACCCCGTCCCCGGGCCGGCGGTGCCCGCGCGGCTGCCGCGCCGGCGTGGCCGGCCGAACGCC CGCCGGCCTGCCCAAGTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Transcriptional Regulator; Anti-Sigma Factor; Transmembrane Protein
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MDCNETRALLGADVDHELSAADAWRIARHVGGCGACRLERERLVALRRAMRQAEYHRAPGALRARIAAGLPLAAAPFAQA PVQDLPASDVPVSDVPVSDAPEQDTPSQDMRAPNKPAVDRPPEAKPMFGADARGGARAGRWFARPGSRGPTLDRPGPGPG PRAAALPGLGWGVALTVALAAAAGFALDARRAATEHAVDEIVASHVRAGLSSRDIDVISTDRHTVKPWFNGRLDFAPPVV DLSASGFALAGGRLDYVGQRRVAVLVYRYRQHVIDVYVWPSGEGGARPYATVSQGYALDRWEAAGMTWWAVTDAEPSALA AFRTALDARVAAPRTE
Sequences:
>Translated_336_residues MDCNETRALLGADVDHELSAADAWRIARHVGGCGACRLERERLVALRRAMRQAEYHRAPGALRARIAAGLPLAAAPFAQA PVQDLPASDVPVSDVPVSDAPEQDTPSQDMRAPNKPAVDRPPEAKPMFGADARGGARAGRWFARPGSRGPTLDRPGPGPG PRAAALPGLGWGVALTVALAAAAGFALDARRAATEHAVDEIVASHVRAGLSSRDIDVISTDRHTVKPWFNGRLDFAPPVV DLSASGFALAGGRLDYVGQRRVAVLVYRYRQHVIDVYVWPSGEGGARPYATVSQGYALDRWEAAGMTWWAVTDAEPSALA AFRTALDARVAAPRTE >Mature_336_residues MDCNETRALLGADVDHELSAADAWRIARHVGGCGACRLERERLVALRRAMRQAEYHRAPGALRARIAAGLPLAAAPFAQA PVQDLPASDVPVSDVPVSDAPEQDTPSQDMRAPNKPAVDRPPEAKPMFGADARGGARAGRWFARPGSRGPTLDRPGPGPG PRAAALPGLGWGVALTVALAAAAGFALDARRAATEHAVDEIVASHVRAGLSSRDIDVISTDRHTVKPWFNGRLDFAPPVV DLSASGFALAGGRLDYVGQRRVAVLVYRYRQHVIDVYVWPSGEGGARPYATVSQGYALDRWEAAGMTWWAVTDAEPSALA AFRTALDARVAAPRTE
Specific function: Unknown
COG id: COG5662
COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35694; Mature: 35694
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDCNETRALLGADVDHELSAADAWRIARHVGGCGACRLERERLVALRRAMRQAEYHRAPG CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH ALRARIAAGLPLAAAPFAQAPVQDLPASDVPVSDVPVSDAPEQDTPSQDMRAPNKPAVDR HHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC PPEAKPMFGADARGGARAGRWFARPGSRGPTLDRPGPGPGPRAAALPGLGWGVALTVALA CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AAAGFALDARRAATEHAVDEIVASHVRAGLSSRDIDVISTDRHTVKPWFNGRLDFAPPVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEECCCCCCCCCCCCCEE DLSASGFALAGGRLDYVGQRRVAVLVYRYRQHVIDVYVWPSGEGGARPYATVSQGYALDR EECCCCEEEECCCCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCCCCCCEEHHCCCEECC WEAAGMTWWAVTDAEPSALAAFRTALDARVAAPRTE HHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MDCNETRALLGADVDHELSAADAWRIARHVGGCGACRLERERLVALRRAMRQAEYHRAPG CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH ALRARIAAGLPLAAAPFAQAPVQDLPASDVPVSDVPVSDAPEQDTPSQDMRAPNKPAVDR HHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC PPEAKPMFGADARGGARAGRWFARPGSRGPTLDRPGPGPGPRAAALPGLGWGVALTVALA CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AAAGFALDARRAATEHAVDEIVASHVRAGLSSRDIDVISTDRHTVKPWFNGRLDFAPPVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEECCCCCCCCCCCCCEE DLSASGFALAGGRLDYVGQRRVAVLVYRYRQHVIDVYVWPSGEGGARPYATVSQGYALDR EECCCCEEEECCCCCCCCCCHHHHHHHHHHHCEEEEEEEECCCCCCCCCEEHHCCCEECC WEAAGMTWWAVTDAEPSALAAFRTALDARVAAPRTE HHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA