| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812574
Identifier: 237812574
GI number: 237812574
Start: 2289355
End: 2291172
Strand: Direct
Name: 237812574
Synonym: GBP346_A2324
Alternate gene names: NA
Gene position: 2289355-2291172 (Clockwise)
Preceding gene: 237812573
Following gene: 237812575
Centisome position: 55.86
GC content: 69.53
Gene sequence:
>1818_bases ATGCCGGATGCCCGAAACCGCCCGCCGCTCGCGCGCCGGCATGTCGTCCATCCTCTTGCCCCCATCTGCATGAAGCCTGT CGTTCGCCTTACCGCTTCCGCCACCCGCGCGCTGCCGCGCTGGCTGCTGCTCACGCTCTGCATCGTCTACGCGGCGTTCG GGCTGTTCGGCCGCGATCCGTGGAAGAACGAGGACGCGGCAGGCTTCGGCGTGATGTGGACGATGGCGCAAGGCGGCCTG CACGACTGGCTGCTACCCAATCTCGTCGGCAAATTCGTCACGTCCGACGGGCCGCTCGGCTACTGGCTCGGCGGCCTCGC GATTCGCGCGCTGCCGTGGGTCGACGCGAGCAACGCGTCGCGCGTCTACACGGGTGTGCTGTTCTGCGTCGCGTGCGCAT TCGTCTGGTACGCGGCCTATCTGCTCGGCCGGCGCGCCGAGATCCAGCCGTTCAAGTACGCGTTCGGCGGCGAGCCCGAG CCGCGCGACTACGGGCGCACGCTCGCCGACGGCGCGCTGCTCGTGCTGCTCGCGTGCTTCGGCCTTGCCGAGCGCGGCCA CGAAACGACGCCGCAGCTCGCGCAGTTCGCATGCATCGCGACGTTCGTCTACGGACTCGTGCGCGCGATCGACAAGCCGA CGCAAGGCGCGCTCTGGTGGGGTCTCGCGCTCGGCCTCGTCGCGCTGTCGGGCAACCCGGTGCTCGTCGCCGCGCTCGCG CTCGGCACACTCGCGCTCTATCTCGTCACGCCCGAGATCCGCTGCGTGCAACTGCCGGCGATCGGGCTGCCGCTCGCCGT GGCCGTGTTCGCGATCTGGCCGCTCGCCGCGTACATCGCGTTTCCCGACGACGCGAACTGGTTCTTCAACCAATGGCTGC ACGGCAGCCTGATGCGCTTCTCCGGCCCGCCCACGACGGTGCTCGCGTACGCGGCGAAGAACCTGCCGCTCTTCACGTGG CCCGCGTGGCCGCTCGCGATCTGGGCATGGGTGAGCTGGGCGGGGCTGCGCCGCCGGCCGCACATCGCGATTCCGCTGTC GGTCGCCGCGCCGCTCCTCGCGCTCGTGATCCTGCAGAGCCAGCAGACGAACCGGATGTACATGCTGCTGCTGCCCGCCC TCGCCGTCATCGCGACGTTCGCGCTGCCGACGCTCAAGCGCGGCGCGATCAACGCGATCGACTGGTTCGCGGTGCTGAGC TTCACGATCCTCGGCACGTTCGTGTGGCTCGTGTGGCTCGCGTCGCTCACGGGCTTCCCGCATCCGCTCGCGCGCAACCT CGGCCGCCTGGTGCCGGGCTACGAGCCGCACTTCAAGGTGCTGTCGTTCGTGTGCGCGGTCGCCGCGACCGCATGCTGGC TGATGCTCGTGCGCTGGCGCATCTCGCGGCAGCCGAAGGTGCTCTGGCGCAGCGTGGTGCTGTCGAGCGCCGGCACGACG CTGATGTGGGTGCTGCTGATGACGCTGTGGCTGCCGATCGTCAATTACAGCCGGACCTATCGCGACGTCGCGCAGCAGAT CGCCGCGCACCTGCCGCCCGACTACGAATGCATCTCGCCCGTGCGGCTCGGCGACGCGCAAATCGCGACGTTCGCGTATT TCGGCGACATGCACTTCTCGTTCACCGATGACTGCGACGTGATCCTGCGCCAGGATCGCGCGGACTTCGGCGAGCCGAGT TCGATCTCGCAATACGTGTGGCGCCTCGTGTGGGAAGGCCGCCGCGTCGCCGACCGCGACGAGCGCTTCCGCCTGTACGA GCGAATCGAGCGCCCGAAGACGCCCGTCAAGCGCCGCCCGCCGCGCAAGGCCCGCTGA
Upstream 100 bases:
>100_bases GCAGCCCAGGCTGCCTTTTTTTATCCCTGTCGATCCCGCGCGCCACCGGTGCCGCGCGGGCCCGCCGATTCGCTGACGCG TGCCGGCCGGCGCGTCTACA
Downstream 100 bases:
>100_bases CCGATGTTCGGCGACATCCGCCGGATCGCCGGTCTCGCCTGGCCGGTGCTCGTCGGCCAGCTCGCGATCATCGCGTTCGG CGTGATCGATACCGCGATGG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Inner Membrane Protein; Glycosyl Transferase Family Protein; Glycosyltransferase; Glycosyl Transferase Family; PMT Family Glycosyltransferase; Glycosyltransferase Pmt Family
Number of amino acids: Translated: 605; Mature: 604
Protein sequence:
>605_residues MPDARNRPPLARRHVVHPLAPICMKPVVRLTASATRALPRWLLLTLCIVYAAFGLFGRDPWKNEDAAGFGVMWTMAQGGL HDWLLPNLVGKFVTSDGPLGYWLGGLAIRALPWVDASNASRVYTGVLFCVACAFVWYAAYLLGRRAEIQPFKYAFGGEPE PRDYGRTLADGALLVLLACFGLAERGHETTPQLAQFACIATFVYGLVRAIDKPTQGALWWGLALGLVALSGNPVLVAALA LGTLALYLVTPEIRCVQLPAIGLPLAVAVFAIWPLAAYIAFPDDANWFFNQWLHGSLMRFSGPPTTVLAYAAKNLPLFTW PAWPLAIWAWVSWAGLRRRPHIAIPLSVAAPLLALVILQSQQTNRMYMLLLPALAVIATFALPTLKRGAINAIDWFAVLS FTILGTFVWLVWLASLTGFPHPLARNLGRLVPGYEPHFKVLSFVCAVAATACWLMLVRWRISRQPKVLWRSVVLSSAGTT LMWVLLMTLWLPIVNYSRTYRDVAQQIAAHLPPDYECISPVRLGDAQIATFAYFGDMHFSFTDDCDVILRQDRADFGEPS SISQYVWRLVWEGRRVADRDERFRLYERIERPKTPVKRRPPRKAR
Sequences:
>Translated_605_residues MPDARNRPPLARRHVVHPLAPICMKPVVRLTASATRALPRWLLLTLCIVYAAFGLFGRDPWKNEDAAGFGVMWTMAQGGL HDWLLPNLVGKFVTSDGPLGYWLGGLAIRALPWVDASNASRVYTGVLFCVACAFVWYAAYLLGRRAEIQPFKYAFGGEPE PRDYGRTLADGALLVLLACFGLAERGHETTPQLAQFACIATFVYGLVRAIDKPTQGALWWGLALGLVALSGNPVLVAALA LGTLALYLVTPEIRCVQLPAIGLPLAVAVFAIWPLAAYIAFPDDANWFFNQWLHGSLMRFSGPPTTVLAYAAKNLPLFTW PAWPLAIWAWVSWAGLRRRPHIAIPLSVAAPLLALVILQSQQTNRMYMLLLPALAVIATFALPTLKRGAINAIDWFAVLS FTILGTFVWLVWLASLTGFPHPLARNLGRLVPGYEPHFKVLSFVCAVAATACWLMLVRWRISRQPKVLWRSVVLSSAGTT LMWVLLMTLWLPIVNYSRTYRDVAQQIAAHLPPDYECISPVRLGDAQIATFAYFGDMHFSFTDDCDVILRQDRADFGEPS SISQYVWRLVWEGRRVADRDERFRLYERIERPKTPVKRRPPRKAR >Mature_604_residues PDARNRPPLARRHVVHPLAPICMKPVVRLTASATRALPRWLLLTLCIVYAAFGLFGRDPWKNEDAAGFGVMWTMAQGGLH DWLLPNLVGKFVTSDGPLGYWLGGLAIRALPWVDASNASRVYTGVLFCVACAFVWYAAYLLGRRAEIQPFKYAFGGEPEP RDYGRTLADGALLVLLACFGLAERGHETTPQLAQFACIATFVYGLVRAIDKPTQGALWWGLALGLVALSGNPVLVAALAL GTLALYLVTPEIRCVQLPAIGLPLAVAVFAIWPLAAYIAFPDDANWFFNQWLHGSLMRFSGPPTTVLAYAAKNLPLFTWP AWPLAIWAWVSWAGLRRRPHIAIPLSVAAPLLALVILQSQQTNRMYMLLLPALAVIATFALPTLKRGAINAIDWFAVLSF TILGTFVWLVWLASLTGFPHPLARNLGRLVPGYEPHFKVLSFVCAVAATACWLMLVRWRISRQPKVLWRSVVLSSAGTTL MWVLLMTLWLPIVNYSRTYRDVAQQIAAHLPPDYECISPVRLGDAQIATFAYFGDMHFSFTDDCDVILRQDRADFGEPSS ISQYVWRLVWEGRRVADRDERFRLYERIERPKTPVKRRPPRKAR
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67586; Mature: 67455
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDARNRPPLARRHVVHPLAPICMKPVVRLTASATRALPRWLLLTLCIVYAAFGLFGRDP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC WKNEDAAGFGVMWTMAQGGLHDWLLPNLVGKFVTSDGPLGYWLGGLAIRALPWVDASNAS CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCH RVYTGVLFCVACAFVWYAAYLLGRRAEIQPFKYAFGGEPEPRDYGRTLADGALLVLLACF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH GLAERGHETTPQLAQFACIATFVYGLVRAIDKPTQGALWWGLALGLVALSGNPVLVAALA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH LGTLALYLVTPEIRCVQLPAIGLPLAVAVFAIWPLAAYIAFPDDANWFFNQWLHGSLMRF HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHC SGPPTTVLAYAAKNLPLFTWPAWPLAIWAWVSWAGLRRRPHIAIPLSVAAPLLALVILQS CCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHC QQTNRMYMLLLPALAVIATFALPTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFP CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC HPLARNLGRLVPGYEPHFKVLSFVCAVAATACWLMLVRWRISRQPKVLWRSVVLSSAGTT CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH LMWVLLMTLWLPIVNYSRTYRDVAQQIAAHLPPDYECISPVRLGDAQIATFAYFGDMHFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHEEECCCCCC FTDDCDVILRQDRADFGEPSSISQYVWRLVWEGRRVADRDERFRLYERIERPKTPVKRRP CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC PRKAR CCCCC >Mature Secondary Structure PDARNRPPLARRHVVHPLAPICMKPVVRLTASATRALPRWLLLTLCIVYAAFGLFGRDP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC WKNEDAAGFGVMWTMAQGGLHDWLLPNLVGKFVTSDGPLGYWLGGLAIRALPWVDASNAS CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCH RVYTGVLFCVACAFVWYAAYLLGRRAEIQPFKYAFGGEPEPRDYGRTLADGALLVLLACF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH GLAERGHETTPQLAQFACIATFVYGLVRAIDKPTQGALWWGLALGLVALSGNPVLVAALA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH LGTLALYLVTPEIRCVQLPAIGLPLAVAVFAIWPLAAYIAFPDDANWFFNQWLHGSLMRF HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHC SGPPTTVLAYAAKNLPLFTWPAWPLAIWAWVSWAGLRRRPHIAIPLSVAAPLLALVILQS CCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHC QQTNRMYMLLLPALAVIATFALPTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFP CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC HPLARNLGRLVPGYEPHFKVLSFVCAVAATACWLMLVRWRISRQPKVLWRSVVLSSAGTT CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH LMWVLLMTLWLPIVNYSRTYRDVAQQIAAHLPPDYECISPVRLGDAQIATFAYFGDMHFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHEEECCCCCC FTDDCDVILRQDRADFGEPSSISQYVWRLVWEGRRVADRDERFRLYERIERPKTPVKRRP CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC PRKAR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA