| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is serB [H]
Identifier: 237812516
GI number: 237812516
Start: 2229762
End: 2230607
Strand: Direct
Name: serB [H]
Synonym: GBP346_A2265
Alternate gene names: 237812516
Gene position: 2229762-2230607 (Clockwise)
Preceding gene: 237812513
Following gene: 237812528
Centisome position: 54.4
GC content: 67.61
Gene sequence:
>846_bases ATGACCACGAATCTCGTCGTTCAAAGCACCGCGCCGCTCTCCGACGCGCATCACAAGCCGCTCGCCGCGCTCGCGCACGG CGCGCGCGTCGTTGCGCTCGACGCGCAGTCGATCCGCATCGAGCGCGCCAACCCCGCGCAGCGCGCCGATATCGACGCAT ACTGCGGCACGCACGCGCTCGATTACGCGTTCGTCGACGCGGCCCGCAAGCTGGCCGACTTCGGCCTCGTCGCGATGGAC ATGGATTCGACGCTGATCACGATCGAGTGCATCGACGAAATCGCGGACTTTTGCGGCCTGAAAGCCGAGGTCTCGGCAAT CACCGAGGCGGCGATGCGCGGCGAGATCAAGGATTTCAACGAGAGCCTGACGCGCCGCGTCGCGCTGCTCGCGGGCCTCG AAGCGAGCGCGCTCGAGCGCGTCTATGAAGAGCGGCTGCGGCTGTCGCCGGGCGCCGAATCGATGCTCGCCGGCGTGAAG GCAGCGGGCCTGAAGACGCTGCTCGTATCGGGCGGTTTCACGTTCTTCACCGAGCGCCTGAAAGCGCGGCTCGGCCTCGA TTTCGCGCATTCGAACACGCTCGAGATCGTCGACGGCAAGCTGACGGGCAAGGTCGTCGGCGAGATCGTCAACGCGGACG TGAAGGCGCGCGCGGTGCGCGAGACCTGCGCGGCGCTCGGCATCGAGCCCGCGCGCGCGATCGTCATCGGCGACGGCTCG AACGATCTGAAGATGATGGCTGCCGGCGGCTTCTCGATCGCGTTTCGCGCGAAACCGATCGTGCGCAGCGCGGCGAGCGC CGCATTCGATCACGTCGGCCTCGACGGGCTGCTGCGGCTGTTCTGA
Upstream 100 bases:
>100_bases CTGGCGCCCATCCGCTGGCGTCCGGCCGCAACCGGCTACAATAACGGGTTCGCCGCATCGCCTTCGTCGGCGCCGCCATC CGCTCCACCGTGACACTTCC
Downstream 100 bases:
>100_bases AACCGCATCCGGCCCGGTCACGCGCGCGGCGCGCAATCGTGCCGCGCTCGCGCCGCCGGCACGACATCTGACGCATCGAA CGAAAAACGGCGCCGCGGGC
Product: phosphoserine phosphatase SerB
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MTTNLVVQSTAPLSDAHHKPLAALAHGARVVALDAQSIRIERANPAQRADIDAYCGTHALDYAFVDAARKLADFGLVAMD MDSTLITIECIDEIADFCGLKAEVSAITEAAMRGEIKDFNESLTRRVALLAGLEASALERVYEERLRLSPGAESMLAGVK AAGLKTLLVSGGFTFFTERLKARLGLDFAHSNTLEIVDGKLTGKVVGEIVNADVKARAVRETCAALGIEPARAIVIGDGS NDLKMMAAGGFSIAFRAKPIVRSAASAAFDHVGLDGLLRLF
Sequences:
>Translated_281_residues MTTNLVVQSTAPLSDAHHKPLAALAHGARVVALDAQSIRIERANPAQRADIDAYCGTHALDYAFVDAARKLADFGLVAMD MDSTLITIECIDEIADFCGLKAEVSAITEAAMRGEIKDFNESLTRRVALLAGLEASALERVYEERLRLSPGAESMLAGVK AAGLKTLLVSGGFTFFTERLKARLGLDFAHSNTLEIVDGKLTGKVVGEIVNADVKARAVRETCAALGIEPARAIVIGDGS NDLKMMAAGGFSIAFRAKPIVRSAASAAFDHVGLDGLLRLF >Mature_280_residues TTNLVVQSTAPLSDAHHKPLAALAHGARVVALDAQSIRIERANPAQRADIDAYCGTHALDYAFVDAARKLADFGLVAMDM DSTLITIECIDEIADFCGLKAEVSAITEAAMRGEIKDFNESLTRRVALLAGLEASALERVYEERLRLSPGAESMLAGVKA AGLKTLLVSGGFTFFTERLKARLGLDFAHSNTLEIVDGKLTGKVVGEIVNADVKARAVRETCAALGIEPARAIVIGDGSN DLKMMAAGGFSIAFRAKPIVRSAASAAFDHVGLDGLLRLF
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=110, Percent_Identity=32.7272727272727, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1790849, Length=219, Percent_Identity=44.7488584474886, Blast_Score=168, Evalue=3e-43, Organism=Saccharomyces cerevisiae, GI6321647, Length=207, Percent_Identity=38.6473429951691, Blast_Score=143, Evalue=3e-35, Organism=Drosophila melanogaster, GI24661601, Length=197, Percent_Identity=26.9035532994924, Blast_Score=72, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 29770; Mature: 29638
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNLVVQSTAPLSDAHHKPLAALAHGARVVALDAQSIRIERANPAQRADIDAYCGTHAL CCCCEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCHHHCCCHHH DYAFVDAARKLADFGLVAMDMDSTLITIECIDEIADFCGLKAEVSAITEAAMRGEIKDFN HHHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH ESLTRRVALLAGLEASALERVYEERLRLSPGAESMLAGVKAAGLKTLLVSGGFTFFTERL HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHCCCHHHHHHHH KARLGLDFAHSNTLEIVDGKLTGKVVGEIVNADVKARAVRETCAALGIEPARAIVIGDGS HHHHCCEECCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCC NDLKMMAAGGFSIAFRAKPIVRSAASAAFDHVGLDGLLRLF CCEEEEEECCEEEEEECCHHHHHHHHHHHHHCCHHHHHHCC >Mature Secondary Structure TTNLVVQSTAPLSDAHHKPLAALAHGARVVALDAQSIRIERANPAQRADIDAYCGTHAL CCCEEEECCCCCCCCCCCHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCHHHCCCHHH DYAFVDAARKLADFGLVAMDMDSTLITIECIDEIADFCGLKAEVSAITEAAMRGEIKDFN HHHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH ESLTRRVALLAGLEASALERVYEERLRLSPGAESMLAGVKAAGLKTLLVSGGFTFFTERL HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHCCCHHHHHHHH KARLGLDFAHSNTLEIVDGKLTGKVVGEIVNADVKARAVRETCAALGIEPARAIVIGDGS HHHHCCEECCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCC NDLKMMAAGGFSIAFRAKPIVRSAASAAFDHVGLDGLLRLF CCEEEEEECCEEEEEECCHHHHHHHHHHHHHCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]