Click here to switch to the map view.

The map label for this gene is rutD [H]

Identifier: 237812385

GI number: 237812385

Start: 2109879

End: 2110763

Strand: Reverse

Name: rutD [H]

Synonym: GBP346_A2133

Alternate gene names: 237812385

Gene position: 2110763-2109879 (Counterclockwise)

Preceding gene: 237812386

Following gene: 237812384

Centisome position: 51.5

GC content: 64.52

Gene sequence:

>885_bases
ATGAAGCCTGAACGCGCGCTCGATCGCGACGCGGCGCGCGGCGACGCCGCGGGTACGCGCTACAGCATCTACCCGCCGCA
GGCGGGCGAAGCGTGCGAGACGGTGGTTTTGATCCATGGCGTCGGCATGAACCATAGCGTATGGTCTCCGCAGATCGATG
CGTTGACCGCGCGCCATCGAGTCGTTGCCTACGACATGCTCGGCCATGGCGGCAGCGCGTTGCCGACGGTTGCGCCGACG
CTCGACGAATATGCGTCGCAACTTGAGCGCTTGCTCGATGCGTTGCAAATCGAGCAAGCGCATGTGATCGGTCATTCGAT
GGGCGCGCTCGTCGCGCTGGAGTTCGCATTGACGCATCCGAATCGCACGATCAGTGTCGTGGCGTTGAACGCGGTGTATG
ACCGCACGCCGGGACAACGCGAAGCGGTGATGAATCGTGCTGCCACGTTGGGCGATGCGCCGGCCGCGGCCGGCATTGAT
GTGACGCTCGAGCGTTGGTTCGGCGATCCGATTCCCGCTCATCTGACGAAAGCGGCCGAGGCCGTGCGCGACCTGCTCTT
GACGGTCGATCCCGTCGGCTATGCACGCACTTACGAATTGTTCGCGCGCTCCGACGACGCGCATGTCGGCCGCTTGTCGA
ACCTTGCCGTGCCCGCGCTGTTCTTGACGGGTGAATACGACGCGAACTCGAATCCGGCGATGTCGCTGGCGATGGCGGCC
GCCGCGCCGTACGGCCGTGCACAGATCATCGCCAACGAGCGCCACATGATGAACGTGACCAACCCCGCGCAAGTGAACGA
ACGGTTGCTCGAATTCTTGCTGAGCGCGTCGGCCGTCAGCACGGTGGGCGATCGGCACGGCGACGCCGGAGGATGCCATG
ACTGA

Upstream 100 bases:

>100_bases
GCGCCCGACGAACTCGTGGTCGCGCTCGGCGCCTCGATCGGCGGCCGGCCGCATCACCGTATCGGCGATCGCTATCAGGA
CCTGAAGGAGCTCGAGTCCA

Downstream 100 bases:

>100_bases
AACGATCAAAGAACCCGCGATCGATATCGCCGAATTTCGTCGCGCGCTCGGCGCGTTCGTGACGGGCGTGACGGTTGTTA
CGACGATTCAGCCCGACGGC

Product: alpha/beta hydrolase family protein

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKPERALDRDAARGDAAGTRYSIYPPQAGEACETVVLIHGVGMNHSVWSPQIDALTARHRVVAYDMLGHGGSALPTVAPT
LDEYASQLERLLDALQIEQAHVIGHSMGALVALEFALTHPNRTISVVALNAVYDRTPGQREAVMNRAATLGDAPAAAGID
VTLERWFGDPIPAHLTKAAEAVRDLLLTVDPVGYARTYELFARSDDAHVGRLSNLAVPALFLTGEYDANSNPAMSLAMAA
AAPYGRAQIIANERHMMNVTNPAQVNERLLEFLLSASAVSTVGDRHGDAGGCHD

Sequences:

>Translated_294_residues
MKPERALDRDAARGDAAGTRYSIYPPQAGEACETVVLIHGVGMNHSVWSPQIDALTARHRVVAYDMLGHGGSALPTVAPT
LDEYASQLERLLDALQIEQAHVIGHSMGALVALEFALTHPNRTISVVALNAVYDRTPGQREAVMNRAATLGDAPAAAGID
VTLERWFGDPIPAHLTKAAEAVRDLLLTVDPVGYARTYELFARSDDAHVGRLSNLAVPALFLTGEYDANSNPAMSLAMAA
AAPYGRAQIIANERHMMNVTNPAQVNERLLEFLLSASAVSTVGDRHGDAGGCHD
>Mature_294_residues
MKPERALDRDAARGDAAGTRYSIYPPQAGEACETVVLIHGVGMNHSVWSPQIDALTARHRVVAYDMLGHGGSALPTVAPT
LDEYASQLERLLDALQIEQAHVIGHSMGALVALEFALTHPNRTISVVALNAVYDRTPGQREAVMNRAATLGDAPAAAGID
VTLERWFGDPIPAHLTKAAEAVRDLLLTVDPVGYARTYELFARSDDAHVGRLSNLAVPALFLTGEYDANSNPAMSLAMAA
AAPYGRAQIIANERHMMNVTNPAQVNERLLEFLLSASAVSTVGDRHGDAGGCHD

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

Organism=Escherichia coli, GI1787244, Length=251, Percent_Identity=27.0916334661355, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 31347; Mature: 31347

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS00221 MIP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPERALDRDAARGDAAGTRYSIYPPQAGEACETVVLIHGVGMNHSVWSPQIDALTARHR
CCCCHHHHHHHCCCCCCCCEEEECCCCCCCHHCEEEEEEECCCCCCCCCCCHHHHHHHHH
VVAYDMLGHGGSALPTVAPTLDEYASQLERLLDALQIEQAHVIGHSMGALVALEFALTHP
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
NRTISVVALNAVYDRTPGQREAVMNRAATLGDAPAAAGIDVTLERWFGDPIPAHLTKAAE
CCEEEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEHHHHCCCCCHHHHHHHHH
AVRDLLLTVDPVGYARTYELFARSDDAHVGRLSNLAVPALFLTGEYDANSNPAMSLAMAA
HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHCEEEEEEEECCCCCCCCHHHHHHHH
AAPYGRAQIIANERHMMNVTNPAQVNERLLEFLLSASAVSTVGDRHGDAGGCHD
HCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKPERALDRDAARGDAAGTRYSIYPPQAGEACETVVLIHGVGMNHSVWSPQIDALTARHR
CCCCHHHHHHHCCCCCCCCEEEECCCCCCCHHCEEEEEEECCCCCCCCCCCHHHHHHHHH
VVAYDMLGHGGSALPTVAPTLDEYASQLERLLDALQIEQAHVIGHSMGALVALEFALTHP
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
NRTISVVALNAVYDRTPGQREAVMNRAATLGDAPAAAGIDVTLERWFGDPIPAHLTKAAE
CCEEEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEHHHHCCCCCHHHHHHHHH
AVRDLLLTVDPVGYARTYELFARSDDAHVGRLSNLAVPALFLTGEYDANSNPAMSLAMAA
HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHCEEEEEEEECCCCCCCCHHHHHHHH
AAPYGRAQIIANERHMMNVTNPAQVNERLLEFLLSASAVSTVGDRHGDAGGCHD
HCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA