| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812362
Identifier: 237812362
GI number: 237812362
Start: 2072425
End: 2074050
Strand: Reverse
Name: 237812362
Synonym: GBP346_A2110
Alternate gene names: NA
Gene position: 2074050-2072425 (Counterclockwise)
Preceding gene: 237812363
Following gene: 237812360
Centisome position: 50.6
GC content: 64.64
Gene sequence:
>1626_bases TTGGCGAGCGCACGCGAGTGGGTCGCGCGTCATCCCGATGATTTGGCGGTGCTGGCCGCGTGCGCCGATGTGGTGCTGCG TGCAGGTCAGGGCGGCGACATCATCGACTGGTTACGGGCGCTGGCCGTGAACTCGCCGAATGAGCGGCATCGTTGGAGGA ACAATCTTGCCACGGTGCTGTTCCAGCAGCGACAGGTGAGCGGCGCGCTTGCCGAACTTCGAGGCCTGACGGCCGAATGT CCCGAATATGTGCCGGGATGGCTCAACTATGCGGCGATGCTCAAGGCCGGTGCGCCCGACGAGTATGAAACCGCGCTTGC GCAAGCGCTGCGGCATCATCCGCAAAACGCCCAGCTGCTTGCCGCGTTTGCGCCTTTGCGCGAGAGGGCGGTGGCCGGAG CGGGCCGCGCGATGTTGCTCGAGCGGTGGCGTTCGATGGCGACGGACGGCTACAGGGATGAAGACAGCGATGCGATCGCG GTGGCGCTTGCCCATATAGACGGACGAGCGGGACAAACCGACAGGCGCATCGCGATCCTTCTGGAGGCCGGTGCGCGTCA TACCGCGCAGCGGCGGCTTGCGCCGCTGCAGGAAAGCAATCGCGCGCTGGCCGATGCCATTCCGGGCTTCTATCCCACAC TCAGGGAGCTTAGACAGCCGGCGCATTGGGTTCCGTGGGAACTGGCTCTTGCGTATCTCGGCATGCAGCGCTGGCAAGAA GGCTTTTCCTGCTACGAAAGTCGCCTGCTGTGGTGGGGGTACAGCGCGGGCTGGACCGCCGCGCAAAAGATGCGTCGTTG GCGCGGCCAGGATCTGGTGGGCGCGACGGTGCTCGTGACGGGTGAGCAGGGGTATGGAGATCAAGTCCAGTTCGCTCGCT TCGCGTCGCGCCTGAAGACGCTCGGAGCGGAACGGGTGATTCTCGGAACGAACAAGCCGCTGCAGCGATTGCTGAGGACG CTACCCGGCGTCGACGACGTCATTGCATTGGGGGACGCGATTCCCGGTTTCGATTGGCATGTGCCGGTGTGCAGCCTGCC CCATGGCCTCGGCGTCACCCATACGGCTGAACTGTCAGCCGTCCCCTATCTGCATGTACCGCAGACATTGCGCCGCCACT GGCGTGCCCGGCTGGATCGTGCGTTGCCGACGGCGGGGCGGGCAATGCGCCCGCGTATCGGATTGTGCTGGGCAGGCAAA CCGACGCACGTGGAGGACGCCGCGCGATCGATCCCGATAGAGCGATTGCGCTCGTTGATTGATCGGTTCGCCACTAAAGT CGACTGGATTCGCATCCAGCCGGGCATGAGCGTGCAGACGCCGGGGATGTGTTGCATTGATCATGCGATCGGCGACTTTC TCGAGCTGGCGGCGCTGCTGGATAACCTCGATCTACTGATCACGGTGGACTCGGCGCCGGTGCATGTTGCCGGTGCGCTG GGCGTACCGGCGTGGCTGATGAATCGGCATTTCGGGGACTGGCGCTGGCCGAGGCAGGAAACCCGAAGCGCCTGGTACGG CTCGGTCGAGGTATTCCATCAAGCAACTCCTGACGACTGGAGCGGGATCCTGGATTCCATCGCGGAGCGGCTGGCGCAAG GTGTCGTGTCCAAGCCCGACGCGTGA
Upstream 100 bases:
>100_bases TCGGGGAGCTGGCCGATGCGCTGGAGCAGTGGCTGGATGTCGAACGGCTGAATGCGTGAGACGAGTCATGTACGGATCGG GAGCCTGCCCGCCACGGGAC
Downstream 100 bases:
>100_bases TGGCGCGCTGCGGGCGCCGACGCTTCGGATTGTGGTTCGGGCCGCCCTAGTGACTGCCCTGCCTGGTTTTCGACTTCGGC GCGGTGACGTCCATCAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: TPR Domain-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain Protein; TPR Repeat Protein; Tetratricopeptide Repeat-Containing Protein; FlbA Protein; Tetratricopeptide Repeat Family Protein; TPR Repeat Containing Protein; Sulfotransferase; TPR Repeat; Exostosin Family Protein; O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide Tpr_2 Repeat Protein; Methyltransferase Type; Glycosyltransferase Family 9 Tpr Repeat Domain; TPR/Sulfotransferase Domain-Containing Protein; FkbM Family Methyltransferase
Number of amino acids: Translated: 541; Mature: 540
Protein sequence:
>541_residues MASAREWVARHPDDLAVLAACADVVLRAGQGGDIIDWLRALAVNSPNERHRWRNNLATVLFQQRQVSGALAELRGLTAEC PEYVPGWLNYAAMLKAGAPDEYETALAQALRHHPQNAQLLAAFAPLRERAVAGAGRAMLLERWRSMATDGYRDEDSDAIA VALAHIDGRAGQTDRRIAILLEAGARHTAQRRLAPLQESNRALADAIPGFYPTLRELRQPAHWVPWELALAYLGMQRWQE GFSCYESRLLWWGYSAGWTAAQKMRRWRGQDLVGATVLVTGEQGYGDQVQFARFASRLKTLGAERVILGTNKPLQRLLRT LPGVDDVIALGDAIPGFDWHVPVCSLPHGLGVTHTAELSAVPYLHVPQTLRRHWRARLDRALPTAGRAMRPRIGLCWAGK PTHVEDAARSIPIERLRSLIDRFATKVDWIRIQPGMSVQTPGMCCIDHAIGDFLELAALLDNLDLLITVDSAPVHVAGAL GVPAWLMNRHFGDWRWPRQETRSAWYGSVEVFHQATPDDWSGILDSIAERLAQGVVSKPDA
Sequences:
>Translated_541_residues MASAREWVARHPDDLAVLAACADVVLRAGQGGDIIDWLRALAVNSPNERHRWRNNLATVLFQQRQVSGALAELRGLTAEC PEYVPGWLNYAAMLKAGAPDEYETALAQALRHHPQNAQLLAAFAPLRERAVAGAGRAMLLERWRSMATDGYRDEDSDAIA VALAHIDGRAGQTDRRIAILLEAGARHTAQRRLAPLQESNRALADAIPGFYPTLRELRQPAHWVPWELALAYLGMQRWQE GFSCYESRLLWWGYSAGWTAAQKMRRWRGQDLVGATVLVTGEQGYGDQVQFARFASRLKTLGAERVILGTNKPLQRLLRT LPGVDDVIALGDAIPGFDWHVPVCSLPHGLGVTHTAELSAVPYLHVPQTLRRHWRARLDRALPTAGRAMRPRIGLCWAGK PTHVEDAARSIPIERLRSLIDRFATKVDWIRIQPGMSVQTPGMCCIDHAIGDFLELAALLDNLDLLITVDSAPVHVAGAL GVPAWLMNRHFGDWRWPRQETRSAWYGSVEVFHQATPDDWSGILDSIAERLAQGVVSKPDA >Mature_540_residues ASAREWVARHPDDLAVLAACADVVLRAGQGGDIIDWLRALAVNSPNERHRWRNNLATVLFQQRQVSGALAELRGLTAECP EYVPGWLNYAAMLKAGAPDEYETALAQALRHHPQNAQLLAAFAPLRERAVAGAGRAMLLERWRSMATDGYRDEDSDAIAV ALAHIDGRAGQTDRRIAILLEAGARHTAQRRLAPLQESNRALADAIPGFYPTLRELRQPAHWVPWELALAYLGMQRWQEG FSCYESRLLWWGYSAGWTAAQKMRRWRGQDLVGATVLVTGEQGYGDQVQFARFASRLKTLGAERVILGTNKPLQRLLRTL PGVDDVIALGDAIPGFDWHVPVCSLPHGLGVTHTAELSAVPYLHVPQTLRRHWRARLDRALPTAGRAMRPRIGLCWAGKP THVEDAARSIPIERLRSLIDRFATKVDWIRIQPGMSVQTPGMCCIDHAIGDFLELAALLDNLDLLITVDSAPVHVAGALG VPAWLMNRHFGDWRWPRQETRSAWYGSVEVFHQATPDDWSGILDSIAERLAQGVVSKPDA
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60066; Mature: 59935
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASAREWVARHPDDLAVLAACADVVLRAGQGGDIIDWLRALAVNSPNERHRWRNNLATVL CCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH FQQRQVSGALAELRGLTAECPEYVPGWLNYAAMLKAGAPDEYETALAQALRHHPQNAQLL HHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHH AAFAPLRERAVAGAGRAMLLERWRSMATDGYRDEDSDAIAVALAHIDGRAGQTDRRIAIL HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCCCCCCCCEEEEE LEAGARHTAQRRLAPLQESNRALADAIPGFYPTLRELRQPAHWVPWELALAYLGMQRWQE EECCCHHHHHHHHCCHHHCCCHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH GFSCYESRLLWWGYSAGWTAAQKMRRWRGQDLVGATVLVTGEQGYGDQVQFARFASRLKT HHHHHHCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH LGAERVILGTNKPLQRLLRTLPGVDDVIALGDAIPGFDWHVPVCSLPHGLGVTHTAELSA CCCCEEEECCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCHHHCC VPYLHVPQTLRRHWRARLDRALPTAGRAMRPRIGLCWAGKPTHVEDAARSIPIERLRSLI CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCHHHHHHHH DRFATKVDWIRIQPGMSVQTPGMCCIDHAIGDFLELAALLDNLDLLITVDSAPVHVAGAL HHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECC GVPAWLMNRHFGDWRWPRQETRSAWYGSVEVFHQATPDDWSGILDSIAERLAQGVVSKPD CCHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC A C >Mature Secondary Structure ASAREWVARHPDDLAVLAACADVVLRAGQGGDIIDWLRALAVNSPNERHRWRNNLATVL CCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH FQQRQVSGALAELRGLTAECPEYVPGWLNYAAMLKAGAPDEYETALAQALRHHPQNAQLL HHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHH AAFAPLRERAVAGAGRAMLLERWRSMATDGYRDEDSDAIAVALAHIDGRAGQTDRRIAIL HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCCCCCCCCEEEEE LEAGARHTAQRRLAPLQESNRALADAIPGFYPTLRELRQPAHWVPWELALAYLGMQRWQE EECCCHHHHHHHHCCHHHCCCHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH GFSCYESRLLWWGYSAGWTAAQKMRRWRGQDLVGATVLVTGEQGYGDQVQFARFASRLKT HHHHHHCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH LGAERVILGTNKPLQRLLRTLPGVDDVIALGDAIPGFDWHVPVCSLPHGLGVTHTAELSA CCCCEEEECCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCHHHCC VPYLHVPQTLRRHWRARLDRALPTAGRAMRPRIGLCWAGKPTHVEDAARSIPIERLRSLI CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCHHHHHHHH DRFATKVDWIRIQPGMSVQTPGMCCIDHAIGDFLELAALLDNLDLLITVDSAPVHVAGAL HHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECC GVPAWLMNRHFGDWRWPRQETRSAWYGSVEVFHQATPDDWSGILDSIAERLAQGVVSKPD CCHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA