| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812354
Identifier: 237812354
GI number: 237812354
Start: 2066542
End: 2067792
Strand: Reverse
Name: 237812354
Synonym: GBP346_A2102
Alternate gene names: NA
Gene position: 2067792-2066542 (Counterclockwise)
Preceding gene: 237812355
Following gene: 237812353
Centisome position: 50.45
GC content: 59.15
Gene sequence:
>1251_bases ATGAAGCGGTATGTCCTTGCGGTGCTGGCGATGGTCTTCCTCGCGGGATGCGGCGGCGGCAATGGAAGCGATGAGAGCGG CAGCGCGCCTGCGAATACCGGCAGTGCTCCCGCCTCGACGATCCCCGGCGCGGGGCAGTACCCGCCCGCCGCTAGTGCCG ATCCAACGTATATCGGTACCTATGCCGCAGTAGCCGGGAACAACGTGGTTCCGGTGTACTTCGAAAGCGGGAACTCTCCG ACCTACAATTCGAATATCCCTTATATCGATGTTCAGATCTGCGTACCGGGAACGAGCCAATGCGTCAGGGTCGATCACGT GCAAGTCGATAGTGGATCGACCGGACTGCGCATAATGAAGTCGGCCTTGAATGGATTGACTCTCCCATTGCAGGCCAATA CGAGCGGTGCGCAGATCAGCGAGTGCATGGCGTATGCCACCAGCGAAGTCTGGGGGCCGGTTGCCCGTAGCGACGTTTAC GTGGGCGGAGAATTCGGCGGTAACCAGACGCTACAGGTCATTGACGATAGCGATTCGGCGAGCGTCCCCGCCAGTTGCAG CTCACAGGGGGCACTGACCGACACGACGAGCAGCTTTGGCGGCAAGGGAATCATCGGAATCAATCAGCTGTTTAGCGATG GCGGCAGCTACTACGCATGTACCGGCACCGGATGCTCGCAGCTAGACAGCAGTCCCGTGACGGTCACCAATCCGGTGGCT GGCTTCGCCCAGGACAACAATGGCGTGTCGATCCAAATTCAGCCGATTTCGGACCTCGGTGCGACGTCGGCATCCGGACA ACTGATCTTCGGTATCAACACGGCAAGCAACAATCGAATCGCTGGGGCAGCGATACTGTACACGGACAAGAACGGCGATC TCTCGGTCAACACGGGTACGCGTACCATGCCGGGCTTTATCGATAGCGGGACAGCGAGCTATTTCTTTCCGGACGACGGC AGCATCCCAATCTGCTCCGATAACCGGAATTGGTATTGCCCGCCCTCGCCGATTAGCGTGAACGTCGACGTCATCGCCGG CGACGCGAGCGTGGATCGCCCATCGTCGTATCGGCTGTCAAGCTACGACAGTATTTCCGCGGACATGGAGGTCGCGCCGA CTGGGGAAAGCGGCTCCGTGTTCAACGATGGCGCTTCTTGGTATGTGCTCGGCCTGCCGTTCTATATCAATCGCCGCGTC TATGGGTCAATTCAGCAGAGCGACAGCGACCCGATGTACTACGCGTTTTAG
Upstream 100 bases:
>100_bases ATGACCTAGTGGTCCAAAGCCAATCGCATGGACACCTATTTCGAGGGCGAGCCTGGATTCCGTCGATGCTTCCCCAAGGC GTGTCTCCCGAGGTGATTCA
Downstream 100 bases:
>100_bases AGACGGTTGCAGAACGGCTGTATGAACCGCGCCGAGTTTTGTGGAGGCTCCAACTCTTGAGAGAATGGAGCCATGAACAA GAAGCCGGGCAAGTTTTCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MKRYVLAVLAMVFLAGCGGGNGSDESGSAPANTGSAPASTIPGAGQYPPAASADPTYIGTYAAVAGNNVVPVYFESGNSP TYNSNIPYIDVQICVPGTSQCVRVDHVQVDSGSTGLRIMKSALNGLTLPLQANTSGAQISECMAYATSEVWGPVARSDVY VGGEFGGNQTLQVIDDSDSASVPASCSSQGALTDTTSSFGGKGIIGINQLFSDGGSYYACTGTGCSQLDSSPVTVTNPVA GFAQDNNGVSIQIQPISDLGATSASGQLIFGINTASNNRIAGAAILYTDKNGDLSVNTGTRTMPGFIDSGTASYFFPDDG SIPICSDNRNWYCPPSPISVNVDVIAGDASVDRPSSYRLSSYDSISADMEVAPTGESGSVFNDGASWYVLGLPFYINRRV YGSIQQSDSDPMYYAF
Sequences:
>Translated_416_residues MKRYVLAVLAMVFLAGCGGGNGSDESGSAPANTGSAPASTIPGAGQYPPAASADPTYIGTYAAVAGNNVVPVYFESGNSP TYNSNIPYIDVQICVPGTSQCVRVDHVQVDSGSTGLRIMKSALNGLTLPLQANTSGAQISECMAYATSEVWGPVARSDVY VGGEFGGNQTLQVIDDSDSASVPASCSSQGALTDTTSSFGGKGIIGINQLFSDGGSYYACTGTGCSQLDSSPVTVTNPVA GFAQDNNGVSIQIQPISDLGATSASGQLIFGINTASNNRIAGAAILYTDKNGDLSVNTGTRTMPGFIDSGTASYFFPDDG SIPICSDNRNWYCPPSPISVNVDVIAGDASVDRPSSYRLSSYDSISADMEVAPTGESGSVFNDGASWYVLGLPFYINRRV YGSIQQSDSDPMYYAF >Mature_416_residues MKRYVLAVLAMVFLAGCGGGNGSDESGSAPANTGSAPASTIPGAGQYPPAASADPTYIGTYAAVAGNNVVPVYFESGNSP TYNSNIPYIDVQICVPGTSQCVRVDHVQVDSGSTGLRIMKSALNGLTLPLQANTSGAQISECMAYATSEVWGPVARSDVY VGGEFGGNQTLQVIDDSDSASVPASCSSQGALTDTTSSFGGKGIIGINQLFSDGGSYYACTGTGCSQLDSSPVTVTNPVA GFAQDNNGVSIQIQPISDLGATSASGQLIFGINTASNNRIAGAAILYTDKNGDLSVNTGTRTMPGFIDSGTASYFFPDDG SIPICSDNRNWYCPPSPISVNVDVIAGDASVDRPSSYRLSSYDSISADMEVAPTGESGSVFNDGASWYVLGLPFYINRRV YGSIQQSDSDPMYYAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42892; Mature: 42892
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRYVLAVLAMVFLAGCGGGNGSDESGSAPANTGSAPASTIPGAGQYPPAASADPTYIGT CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE YAAVAGNNVVPVYFESGNSPTYNSNIPYIDVQICVPGTSQCVRVDHVQVDSGSTGLRIMK EEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHH SALNGLTLPLQANTSGAQISECMAYATSEVWGPVARSDVYVGGEFGGNQTLQVIDDSDSA HHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEECCCCC SVPASCSSQGALTDTTSSFGGKGIIGINQLFSDGGSYYACTGTGCSQLDSSPVTVTNPVA CCCCCCCCCCCEEECCCCCCCCEEEEHHHHHCCCCCEEEECCCCHHHCCCCCEEEECCCC GFAQDNNGVSIQIQPISDLGATSASGQLIFGINTASNNRIAGAAILYTDKNGDLSVNTGT CEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEECCC RTMPGFIDSGTASYFFPDDGSIPICSDNRNWYCPPSPISVNVDVIAGDASVDRPSSYRLS CCCCCEECCCCEEEECCCCCCEEEECCCCCEECCCCCCEEEEEEEECCCCCCCCCCEEEC SYDSISADMEVAPTGESGSVFNDGASWYVLGLPFYINRRVYGSIQQSDSDPMYYAF CCCCCCCCEEEECCCCCCCEECCCCCEEEEECCEEECCEEEEEEECCCCCCEEEEC >Mature Secondary Structure MKRYVLAVLAMVFLAGCGGGNGSDESGSAPANTGSAPASTIPGAGQYPPAASADPTYIGT CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE YAAVAGNNVVPVYFESGNSPTYNSNIPYIDVQICVPGTSQCVRVDHVQVDSGSTGLRIMK EEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHH SALNGLTLPLQANTSGAQISECMAYATSEVWGPVARSDVYVGGEFGGNQTLQVIDDSDSA HHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEECCCCC SVPASCSSQGALTDTTSSFGGKGIIGINQLFSDGGSYYACTGTGCSQLDSSPVTVTNPVA CCCCCCCCCCCEEECCCCCCCCEEEEHHHHHCCCCCEEEECCCCHHHCCCCCEEEECCCC GFAQDNNGVSIQIQPISDLGATSASGQLIFGINTASNNRIAGAAILYTDKNGDLSVNTGT CEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEECCC RTMPGFIDSGTASYFFPDDGSIPICSDNRNWYCPPSPISVNVDVIAGDASVDRPSSYRLS CCCCCEECCCCEEEECCCCCCEEEECCCCCEECCCCCCEEEEEEEECCCCCCCCCCEEEC SYDSISADMEVAPTGESGSVFNDGASWYVLGLPFYINRRVYGSIQQSDSDPMYYAF CCCCCCCCEEEECCCCCCCEECCCCCEEEEECCEEECCEEEEEEECCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA