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The map label for this gene is rpoE [C]

Identifier: 237812338

GI number: 237812338

Start: 2051871

End: 2052416

Strand: Reverse

Name: rpoE [C]

Synonym: GBP346_A2086

Alternate gene names: 237812338

Gene position: 2052416-2051871 (Counterclockwise)

Preceding gene: 237812341

Following gene: 237812337

Centisome position: 50.08

GC content: 62.82

Gene sequence:

>546_bases
TTGCATTCCGTGGAATCCCGCTTGAGAGCGCTGTTCGTCAGCGGCCTCGCCGGCCATGCGCCGGATTACCGGTCGTTCCT
TTCGGAGCTGACCCGCCACTTGCGCGGCTTTCTCCGCAAGCGGATCCCGCAGTTTGACGCGGACATCGAAGATCTCGTGC
AGGAGATCCTGCTCGCCGTCCATAATGCACGTCATACGTATCGCGCGGACGAACCGCTGACGGCGTGGGTACATGCCATC
GCGCGCTACAAGCTGATGGATTTCTTCCGGACGCGCGCCCGCCGCGAAGCGCTGCACGATCCGCTTGACGATCACACGGA
CATCTTTTCCGAACCCGACGACGACGCGTCCGACGCGCATCGCGACATCGGCAGGCTGCTGGATCATCTGCCGGACAAGC
AACGGCTATCGATCCTGCATGTGAAGCTGCAGGGCTTGTCGGTTGCCGAGGCGGCGCAACTGATCGGTGCGTCCGAATCC
GTCGTCAAGGTCAGCATTCACAGGGGACTGAAGGCGCTCGCGGCGCGCGTGCGAGGAGTGGTATGA

Upstream 100 bases:

>100_bases
GCACTCGCTGGCGCTGGCAGCGCGATGCGTGAGCCCCGGCGTTCGGGGCGGGACGCAGCCGCGGCAAGATGGCCTGGTGC
GCTAGGTCCGGGGCCCGATC

Downstream 100 bases:

>100_bases
AAACGAACGATTTCATCGACATGCTGGCGGCGGGCGTCACACCCGTCGAGCGCGGCGTCCCGGCCAGGCGCCTGGGCAGT
GCGCTTGCCGTCGCTGCGGT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma Factor SigM; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; ECF Family Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma Factor SigZ; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase ECF-Type Sigma Factor X; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor SigM; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MHSVESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAVHNARHTYRADEPLTAWVHAI
ARYKLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAHRDIGRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASES
VVKVSIHRGLKALAARVRGVV

Sequences:

>Translated_181_residues
MHSVESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAVHNARHTYRADEPLTAWVHAI
ARYKLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAHRDIGRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASES
VVKVSIHRGLKALAARVRGVV
>Mature_181_residues
MHSVESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAVHNARHTYRADEPLTAWVHAI
ARYKLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAHRDIGRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASES
VVKVSIHRGLKALAARVRGVV

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20504; Mature: 20504

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSVESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAV
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
HNARHTYRADEPLTAWVHAIARYKLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAH
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHH
RDIGRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASESVVKVSIHRGLKALAARVRGV
HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
V
C
>Mature Secondary Structure
MHSVESRLRALFVSGLAGHAPDYRSFLSELTRHLRGFLRKRIPQFDADIEDLVQEILLAV
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
HNARHTYRADEPLTAWVHAIARYKLMDFFRTRARREALHDPLDDHTDIFSEPDDDASDAH
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHH
RDIGRLLDHLPDKQRLSILHVKLQGLSVAEAAQLIGASESVVKVSIHRGLKALAARVRGV
HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA