| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812108
Identifier: 237812108
GI number: 237812108
Start: 1801635
End: 1802204
Strand: Direct
Name: 237812108
Synonym: GBP346_A1853
Alternate gene names: NA
Gene position: 1801635-1802204 (Clockwise)
Preceding gene: 237812100
Following gene: 237812109
Centisome position: 43.96
GC content: 69.3
Gene sequence:
>570_bases GTGCGTGCGCCGCTTCGCGGCGGCGCACGGTTCGCCCTCCCGTATTTTCGCTTTCGTTCGCCTATACGCTTCATGGATAT CGCTCTCGATTTACAGTCGATCGCCGTACAGGAAAAAACCCTCGTGTTCCCGCAGTTCGACGCCGCGCGCGCATGGGCGC TCGGCTCGCAACTGCGCGAATTCGCGCTCGCGCGCGGCCACGCGGTCGCGATCGACGTGCGCACGTTCGGTCAGCCGCTC TTCTTCGCGCTCGTCGACGGCGCGACGCCCGACAACGTCGACTGGGCGCGCCGCAAGGGCAACGTCGTCGCGCACTTCAG GCGCAGCTCGTATGCGATCGGGCTGCGCCTGCAGCAGGCGGGCGCGACGCTCGCCGACAAGCATGGGCTGCCCGCTGCCG AGTACGCGTCGCACGGCGGCGCGTTTCCGATCGCGGTCGCGGGCGCCGGCGTGATCGGCTCGGTCACGGTGTCGGGGCTG CCGCAGCGCGGCGATCACGAGCTCGTCGTCGAAGCGCTGTGCGCGCAATTGGGCCACGCTTACGCGACGCTCGCGCTCAC GGGGAACTGA
Upstream 100 bases:
>100_bases TCGCAAGCCGTGCTGCGCTAGAATCGGAACGCATCAGCGAACCGCTTCTTCGAGCCGCTTCTTCGAGTCGTTTCGCCGGC CGAGCCGCCGAGGCTAGGTA
Downstream 100 bases:
>100_bases CGCGATGCAACTTCCAGGTTACGCATGGCTCGCGATCGCGATCGTCGCCGAGGTGGTCGGCACGTCGGCGCTGCGCGCGG CCGAAGGTTTCACGCGGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MRAPLRGGARFALPYFRFRSPIRFMDIALDLQSIAVQEKTLVFPQFDAARAWALGSQLREFALARGHAVAIDVRTFGQPL FFALVDGATPDNVDWARRKGNVVAHFRRSSYAIGLRLQQAGATLADKHGLPAAEYASHGGAFPIAVAGAGVIGSVTVSGL PQRGDHELVVEALCAQLGHAYATLALTGN
Sequences:
>Translated_189_residues MRAPLRGGARFALPYFRFRSPIRFMDIALDLQSIAVQEKTLVFPQFDAARAWALGSQLREFALARGHAVAIDVRTFGQPL FFALVDGATPDNVDWARRKGNVVAHFRRSSYAIGLRLQQAGATLADKHGLPAAEYASHGGAFPIAVAGAGVIGSVTVSGL PQRGDHELVVEALCAQLGHAYATLALTGN >Mature_189_residues MRAPLRGGARFALPYFRFRSPIRFMDIALDLQSIAVQEKTLVFPQFDAARAWALGSQLREFALARGHAVAIDVRTFGQPL FFALVDGATPDNVDWARRKGNVVAHFRRSSYAIGLRLQQAGATLADKHGLPAAEYASHGGAFPIAVAGAGVIGSVTVSGL PQRGDHELVVEALCAQLGHAYATLALTGN
Specific function: Unknown
COG id: COG4702
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0303 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005624 - InterPro: IPR010371 [H]
Pfam domain/function: PF03928 DUF336 [H]
EC number: NA
Molecular weight: Translated: 20209; Mature: 20209
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAPLRGGARFALPYFRFRSPIRFMDIALDLQSIAVQEKTLVFPQFDAARAWALGSQLRE CCCCCCCCCEEECHHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHH FALARGHAVAIDVRTFGQPLFFALVDGATPDNVDWARRKGNVVAHFRRSSYAIGLRLQQA HHHHCCCEEEEEHHHCCCCEEEEEECCCCCCCCHHHHHCCCEEEEEECCCEEEEEEEECC GATLADKHGLPAAEYASHGGAFPIAVAGAGVIGSVTVSGLPQRGDHELVVEALCAQLGHA CCCHHHCCCCCHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCE YATLALTGN EEEEEEECC >Mature Secondary Structure MRAPLRGGARFALPYFRFRSPIRFMDIALDLQSIAVQEKTLVFPQFDAARAWALGSQLRE CCCCCCCCCEEECHHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHH FALARGHAVAIDVRTFGQPLFFALVDGATPDNVDWARRKGNVVAHFRRSSYAIGLRLQQA HHHHCCCEEEEEHHHCCCCEEEEEECCCCCCCCHHHHHCCCEEEEEECCCEEEEEEEECC GATLADKHGLPAAEYASHGGAFPIAVAGAGVIGSVTVSGLPQRGDHELVVEALCAQLGHA CCCHHHCCCCCHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCE YATLALTGN EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA