| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is 237811877
Identifier: 237811877
GI number: 237811877
Start: 1555211
End: 1556626
Strand: Reverse
Name: 237811877
Synonym: GBP346_A1617
Alternate gene names: NA
Gene position: 1556626-1555211 (Counterclockwise)
Preceding gene: 237811878
Following gene: 237811875
Centisome position: 37.98
GC content: 74.36
Gene sequence:
>1416_bases ATGAAGCAGCGCGCGTGGTTGAGCAAGGCGGCCTTCGTGGCCGCGGTTTTCGTCGTCGTGTGGATCGCGACGATCGCCTA TTGGAAAGCGACCTATCACCCGCCGAGCGCAACGGAATTGCTGACGCACGGCATCGCGCTGCCGGCGCTGCTGGCCGCGT GCCTCGCATGGGCGCGCCGGGCCGCCGGCCGGCTGCGCGAAGCGTCGGCCGCCGCCGCGCAAACCGCCGCGCCGTCGGCG CCGCAAGCGAGCACCGCGCAAGCCGCCGACGAAGCCGCCATGCGCACATGGACGCTCGCGCTGCTCGACAGCAGTGTGCG GTTCCCGACGGGCGCGACGACGGCCGACATCGACGGCGCCGCGCGCGACGAAACCGTGGTCGGCCTGCATCCCGCGCTCC GGCGCGCCGACGGCACGGGCGTGTTCGCGAGCGGCGTGGCGTCGGTTTCGATCGACCATTTCGACGAGCGCCTGCTGCCG CCCGGCGCCGATGCCGCGCTGAACGACGAGCATGCGCGCGCGCTGCTGCTCGCCGCGGACGTGCTCGACGAACTGCTCGA GCGCCATGCGGTGCTGGCGACGGACGGTGCATCCCGCCCCGCCGGGCCGCTCAGGTTGCACCTGCTGCTGCCCGAGCGCT GGCAGCCGATGGCGGGCGCGCTCGCCGCGTGGCTCGACACGCACGTCGCGCGCGAGCGCTGGATGCCCGGCGTCGAACGC GTGCAGACCCGCATGGTCGCGAACCCGGTGCAGGCGTGGGCGGTCGTCGACGAACTGATCGTTTCGCTGCATCGCGAGCC GTCGAACGCAAGCCATGTCGTGCTCGCCTGCGATTCGTCGCTGAGCGACGCCACCGTGCACGCGCTCGACCATGCCGGCA AGCTCTACGGACACAATCGGCCCGATGGCCGGATTCCAGGCGAAGGCGCATGCGCGCTGCTGCTCGCGCATCCCGCGGCG GCCGACGCCGCGGACGCACCGCGCGTTCACCGGCTCGTCGCGGCTCGCGCGCCCACGCCCGACGGCGCGCCAGCCAAGGC GCCAGCCGATACGCTCGCGCCGCTGCTCGAGGCCGCGCGCACGCAGACGGCGGCGGCCGAGATCGCGCCGGCCGGCTGCG GGCTCGTGAGCGATGCGGACCAGCGCGGCGGCAGCCGCACCGAGATCGCGGCCGTCGCCGAGCGGAACTGGCCCGACGAC GCGCGCGAACGCTGCCGCCATCTCGGCGTCGCGAACGGCGAAAGCGGCGCGGCGCTCGCGCTGGGCGCCATCGCCGTCGC CGGCTGGCGCGCGAGCGAGGAACAGATGCCGATGCTCGCCGCGTCGATCGCCGATCCGGTTGCGCGCGGCGTCATGCTTG TCGCGCCCGCGCCGATCGCACCCGTCACCGCGTCCGAGCTTGCCGCCGCCGCGTGA
Upstream 100 bases:
>100_bases CGCGCGACGGCTATCGCACCACCTGCGGCGCGGTGCTGATCGCGAGCCAGTCGAGCACGGGCGGCGACGCGGCGTGACCG AAGCATCGACGGGAAATCGG
Downstream 100 bases:
>100_bases GCGCGCGCCGCGGCCGCTGTCCGGCTAGATCAGGAATCCGCCGCCCGCGCGACGCGCGCACGTGCACAGCACGTCGCCGG TTCGGCTCGACACGAGCACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 471; Mature: 471
Protein sequence:
>471_residues MKQRAWLSKAAFVAAVFVVVWIATIAYWKATYHPPSATELLTHGIALPALLAACLAWARRAAGRLREASAAAAQTAAPSA PQASTAQAADEAAMRTWTLALLDSSVRFPTGATTADIDGAARDETVVGLHPALRRADGTGVFASGVASVSIDHFDERLLP PGADAALNDEHARALLLAADVLDELLERHAVLATDGASRPAGPLRLHLLLPERWQPMAGALAAWLDTHVARERWMPGVER VQTRMVANPVQAWAVVDELIVSLHREPSNASHVVLACDSSLSDATVHALDHAGKLYGHNRPDGRIPGEGACALLLAHPAA ADAADAPRVHRLVAARAPTPDGAPAKAPADTLAPLLEAARTQTAAAEIAPAGCGLVSDADQRGGSRTEIAAVAERNWPDD ARERCRHLGVANGESGAALALGAIAVAGWRASEEQMPMLAASIADPVARGVMLVAPAPIAPVTASELAAAA
Sequences:
>Translated_471_residues MKQRAWLSKAAFVAAVFVVVWIATIAYWKATYHPPSATELLTHGIALPALLAACLAWARRAAGRLREASAAAAQTAAPSA PQASTAQAADEAAMRTWTLALLDSSVRFPTGATTADIDGAARDETVVGLHPALRRADGTGVFASGVASVSIDHFDERLLP PGADAALNDEHARALLLAADVLDELLERHAVLATDGASRPAGPLRLHLLLPERWQPMAGALAAWLDTHVARERWMPGVER VQTRMVANPVQAWAVVDELIVSLHREPSNASHVVLACDSSLSDATVHALDHAGKLYGHNRPDGRIPGEGACALLLAHPAA ADAADAPRVHRLVAARAPTPDGAPAKAPADTLAPLLEAARTQTAAAEIAPAGCGLVSDADQRGGSRTEIAAVAERNWPDD ARERCRHLGVANGESGAALALGAIAVAGWRASEEQMPMLAASIADPVARGVMLVAPAPIAPVTASELAAAA >Mature_471_residues MKQRAWLSKAAFVAAVFVVVWIATIAYWKATYHPPSATELLTHGIALPALLAACLAWARRAAGRLREASAAAAQTAAPSA PQASTAQAADEAAMRTWTLALLDSSVRFPTGATTADIDGAARDETVVGLHPALRRADGTGVFASGVASVSIDHFDERLLP PGADAALNDEHARALLLAADVLDELLERHAVLATDGASRPAGPLRLHLLLPERWQPMAGALAAWLDTHVARERWMPGVER VQTRMVANPVQAWAVVDELIVSLHREPSNASHVVLACDSSLSDATVHALDHAGKLYGHNRPDGRIPGEGACALLLAHPAA ADAADAPRVHRLVAARAPTPDGAPAKAPADTLAPLLEAARTQTAAAEIAPAGCGLVSDADQRGGSRTEIAAVAERNWPDD ARERCRHLGVANGESGAALALGAIAVAGWRASEEQMPMLAASIADPVARGVMLVAPAPIAPVTASELAAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48826; Mature: 48826
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQRAWLSKAAFVAAVFVVVWIATIAYWKATYHPPSATELLTHGIALPALLAACLAWARR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AAGRLREASAAAAQTAAPSAPQASTAQAADEAAMRTWTLALLDSSVRFPTGATTADIDGA HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC ARDETVVGLHPALRRADGTGVFASGVASVSIDHFDERLLPPGADAALNDEHARALLLAAD CCCCEEEECCHHHHCCCCCCCHHHCHHHEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH VLDELLERHAVLATDGASRPAGPLRLHLLLPERWQPMAGALAAWLDTHVARERWMPGVER HHHHHHHHCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH VQTRMVANPVQAWAVVDELIVSLHREPSNASHVVLACDSSLSDATVHALDHAGKLYGHNR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC PDGRIPGEGACALLLAHPAAADAADAPRVHRLVAARAPTPDGAPAKAPADTLAPLLEAAR CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH TQTAAAEIAPAGCGLVSDADQRGGSRTEIAAVAERNWPDDARERCRHLGVANGESGAALA HHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHH LGAIAVAGWRASEEQMPMLAASIADPVARGVMLVAPAPIAPVTASELAAAA HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHCC >Mature Secondary Structure MKQRAWLSKAAFVAAVFVVVWIATIAYWKATYHPPSATELLTHGIALPALLAACLAWARR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AAGRLREASAAAAQTAAPSAPQASTAQAADEAAMRTWTLALLDSSVRFPTGATTADIDGA HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC ARDETVVGLHPALRRADGTGVFASGVASVSIDHFDERLLPPGADAALNDEHARALLLAAD CCCCEEEECCHHHHCCCCCCCHHHCHHHEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH VLDELLERHAVLATDGASRPAGPLRLHLLLPERWQPMAGALAAWLDTHVARERWMPGVER HHHHHHHHCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH VQTRMVANPVQAWAVVDELIVSLHREPSNASHVVLACDSSLSDATVHALDHAGKLYGHNR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC PDGRIPGEGACALLLAHPAAADAADAPRVHRLVAARAPTPDGAPAKAPADTLAPLLEAAR CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH TQTAAAEIAPAGCGLVSDADQRGGSRTEIAAVAERNWPDDARERCRHLGVANGESGAALA HHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHH LGAIAVAGWRASEEQMPMLAASIADPVARGVMLVAPAPIAPVTASELAAAA HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA