Definition Burkholderia pseudomallei MSHR346 chromosome I, complete genome.
Accession NC_012695
Length 4,098,576

Click here to switch to the map view.

The map label for this gene is 237811875

Identifier: 237811875

GI number: 237811875

Start: 1552221

End: 1553225

Strand: Reverse

Name: 237811875

Synonym: GBP346_A1615

Alternate gene names: NA

Gene position: 1553225-1552221 (Counterclockwise)

Preceding gene: 237811877

Following gene: 237811873

Centisome position: 37.9

GC content: 73.23

Gene sequence:

>1005_bases
ATGGACGAACGCTGCACGGGCAATCAGCCAGGGCCGACGCGACGGCTCACTTTACCGGAACATTCAGGAGCAGTCCACGC
CGCCCCTGCCCGTCGGCCGATCGGACGAGGCGCAGCGATTGCGGCCGTCGCAGGCGAGGACGGAAACCGCGCGTGCGGGC
GGCGCAAGCGGCCGCGCGATGCGCGGCGGCACGCGCATCGCGGCGGTGCGCACGCGCCGACGGTGCGATGCGGCGCGCCG
CCGATCGTCGGCCGCACTCGCCCGCCGACAAAAACCATCCGCGTCGACCTGCGCGCCGAATCATGCCGGATGCCAGGTTG
GATTCGCCGCACGCACGCATGGATCGGCGAGATGCCCGCGCGTACGGATCGACGAGACGCACAGGCGATCGCGCCCGCGC
GCCGCCCCGACGTGCCGGGCGCGTACGCGGCCGCGCAGGCGAGCGCGGCGAAGATCAAGGCGGCGGAATCGGAGTTCATG
CCGAAGGTGTTCGTGTCCGCGTCGACGCCGTACAACGCCGGGCGCGCGGCAATCAACGCGATCCCGCCCGTCGGCCAGCA
GGCGCCGACCGTGAACCTGAACGGCAGCCGCTACGGCGGCGGCGTGTTCGTCGGCGTGACGATTCCGCGGTACGACGTCG
GCTTGCGCTCGGCCGTGCTGATGCAGGCGCGCAACGACGCCGGCAGCGCATCCGCGCGGCTCGAGCGCACGAAGGACGAA
GGACGAAGCGGTCAGGCAGATCGTCGCCGGGCAGAACGCGCTGCGCGCGAGTCTCGCGTCGCACGATGCGGCGGCGACGC
TCGTCGACGCCGCGCAGACCACTGCGACGCCGCGCTCGACGCGTACCGGCACGGCGTCGGCTCGCTCACCGACGCGATGC
TCGCGCGGAACGACCTGCTCGCCGCGCAAACCGCGTACGCGGACAGCTACGGCACCGCGCTGTCGGCCGCGGCGTCGCCC
GCGCTCGCGACGGGGACGGTCGCGCAGACGCCGGAGGCGCAATGA

Upstream 100 bases:

>100_bases
CGAAAGTGCCTTCGCACGCCGGCGGCCGATGCCGACGACACGGCGGGCCACGCGTGGGAAGCGAGCGCGCGAACGGCTGG
AGCCGACGCGCGGCTCCCGG

Downstream 100 bases:

>100_bases
TGCATCGGCGGAACGACCGAGCGCGGCTGTCGCTGTTGCCGTTGCCGTTGCCGCCGCTTTTACCGTTGCCCGATCAGCCC
CGCGCGCGCCGGCCGCGGCG

Product: outer membrane efflux protein

Products: NA

Alternate protein names: Outer Membrane Efflux Family Protein

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRDARRHAHRGGAHAPTVRCGAP
PIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPARTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFM
PKVFVSASTPYNAGRAAINAIPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE
GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLLAAQTAYADSYGTALSAAASP
ALATGTVAQTPEAQ

Sequences:

>Translated_334_residues
MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRDARRHAHRGGAHAPTVRCGAP
PIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPARTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFM
PKVFVSASTPYNAGRAAINAIPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE
GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLLAAQTAYADSYGTALSAAASP
ALATGTVAQTPEAQ
>Mature_334_residues
MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRDARRHAHRGGAHAPTVRCGAP
PIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPARTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFM
PKVFVSASTPYNAGRAAINAIPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE
GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLLAAQTAYADSYGTALSAAASP
ALATGTVAQTPEAQ

Specific function: Unknown

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35334; Mature: 35334

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRD
CCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCHH
ARRHAHRGGAHAPTVRCGAPPIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPA
HHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC
RTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFMPKVFVSASTPYNAGRAAINA
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHC
IPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE
CCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHC
GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLL
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
AAQTAYADSYGTALSAAASPALATGTVAQTPEAQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDERCTGNQPGPTRRLTLPEHSGAVHAAPARRPIGRGAAIAAVAGEDGNRACGRRKRPRD
CCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCHH
ARRHAHRGGAHAPTVRCGAPPIVGRTRPPTKTIRVDLRAESCRMPGWIRRTHAWIGEMPA
HHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC
RTDRRDAQAIAPARRPDVPGAYAAAQASAAKIKAAESEFMPKVFVSASTPYNAGRAAINA
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHC
IPPVGQQAPTVNLNGSRYGGGVFVGVTIPRYDVGLRSAVLMQARNDAGSASARLERTKDE
CCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHC
GRSGQADRRRAERAARESRVARCGGDARRRRADHCDAALDAYRHGVGSLTDAMLARNDLL
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
AAQTAYADSYGTALSAAASPALATGTVAQTPEAQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA