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The map label for this gene is ybaO [H]

Identifier: 237811662

GI number: 237811662

Start: 1346763

End: 1347230

Strand: Direct

Name: ybaO [H]

Synonym: GBP346_A1399

Alternate gene names: 237811662

Gene position: 1346763-1347230 (Clockwise)

Preceding gene: 237811660

Following gene: 237811666

Centisome position: 32.86

GC content: 66.24

Gene sequence:

>468_bases
ATGGACGCGATCGATCGTAAGTTGCTCGAGCTGCTGCAGGAGGACGCGACGCTGCCGATCGCCGAACTCGCGCAGCGGGT
GAATCTGTCGCAGACGCCGTGCTGGAAGCGGATTCAGCGGCTCAAGGAAACGGGGGCGATCCGGGCGCAGGTCGCGCTGT
GCGATCCGCGCCGGCTCGGCGTGGGGACGACGGTGTTCGTCGCGGTGCGCACGAATCAGCACACCGAGGAGTGGGCGGCG
CGCTTCACGCAGGTCGTGCGCGACATGCCGGAAGTCGTCGAGGTCTACCGGATGAGCGGGGAGACGGACTATCTGCTGCG
CGTCGTCGTCGCCGACATCGACGATTACGACCGCATCTACAAGAAGCTGATCCGCTCGGTGCCGCTCTTCGACGTGAGTT
CGTCGTTCGCGATGGAGCAGATCAAGTATTCGACCGCGCTGCCCGTGCGCGACGGCGGCGCGGGCTGA

Upstream 100 bases:

>100_bases
GTACGTATTTATACCGGTCGACTTGGAGAAACGGATTCCATATTGTTCCCTCATGCGAACAATGAATAGAATAATTTTCT
ATTCGCTACGGACTGGGGAA

Downstream 100 bases:

>100_bases
CACGCGGCGCGTGGGCGCCGCCGCGCGGGTTTGCCGTACCCTTTCGCGGCGCGCGTTCGCCGCGCGGCGCGCCGCCGTAT
CGAGCCGCCGTATCGAGCCG

Product: transcriptional regulator, AsnC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MDAIDRKLLELLQEDATLPIAELAQRVNLSQTPCWKRIQRLKETGAIRAQVALCDPRRLGVGTTVFVAVRTNQHTEEWAA
RFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYDRIYKKLIRSVPLFDVSSSFAMEQIKYSTALPVRDGGAG

Sequences:

>Translated_155_residues
MDAIDRKLLELLQEDATLPIAELAQRVNLSQTPCWKRIQRLKETGAIRAQVALCDPRRLGVGTTVFVAVRTNQHTEEWAA
RFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYDRIYKKLIRSVPLFDVSSSFAMEQIKYSTALPVRDGGAG
>Mature_155_residues
MDAIDRKLLELLQEDATLPIAELAQRVNLSQTPCWKRIQRLKETGAIRAQVALCDPRRLGVGTTVFVAVRTNQHTEEWAA
RFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYDRIYKKLIRSVPLFDVSSSFAMEQIKYSTALPVRDGGAG

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=56.6666666666667, Blast_Score=185, Evalue=1e-48,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=33.112582781457, Blast_Score=94, Evalue=6e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17586; Mature: 17586

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAIDRKLLELLQEDATLPIAELAQRVNLSQTPCWKRIQRLKETGAIRAQVALCDPRRLG
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
VGTTVFVAVRTNQHTEEWAARFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYDRIY
CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
KKLIRSVPLFDVSSSFAMEQIKYSTALPVRDGGAG
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDAIDRKLLELLQEDATLPIAELAQRVNLSQTPCWKRIQRLKETGAIRAQVALCDPRRLG
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
VGTTVFVAVRTNQHTEEWAARFTQVVRDMPEVVEVYRMSGETDYLLRVVVADIDDYDRIY
CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
KKLIRSVPLFDVSSSFAMEQIKYSTALPVRDGGAG
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]