| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811506
Identifier: 237811506
GI number: 237811506
Start: 1196054
End: 1197034
Strand: Reverse
Name: 237811506
Synonym: GBP346_A1236
Alternate gene names: NA
Gene position: 1197034-1196054 (Counterclockwise)
Preceding gene: 237811507
Following gene: 237811505
Centisome position: 29.21
GC content: 75.23
Gene sequence:
>981_bases ATGAGCGGCGGATTCCCGCGTTCTGCCTTCCGTCTTCCCCGTCCCGTCGCCGCCGCGGCACCCGTCGTCCTCGCCACGCT CGCGCTGTCCGGTTGCGCGCTGTTCCGCGCGCCGCAAGCGAGCGCGCCCGTCGTGGAAGCCGTCGCCGTGCCCGTCGAGC CGGCGAGCGAGCCCATCGCGGCGCCCGAGCCCGCGAGCGCGCCCGAACCCGCCGAGACCGCGCCGCCGAAGAAGCCGCAC CGCGAGGCCGCGCCGCCGCGCAAGCCCGCGCGCGTCGCGCCGCCGGCGCCCGCGCCGGCCCCCGCGCCCGCGCCGCTCGT GACGACGCGCGCAATCGAGCGCAGCCAGGTGCACGCGCTCCTCGACAGCGAGGTGCGGCGCGGCGGCAAGGTGATCGGCC GCGCGGTCGACATGACGGCGGACGCGAACGGCGCGCCGCGCGAGATGCTGGTGAACCTGCAAGGCTTCATGGGCGTCGGC GACCGCAAGGTCAGCTTCCCGTGGAAGCTGTTTCGCTTCACGCCGGGCGGCAGGCACGAGCCGGTCATCCTCGACATGCC GGCCACTGCGCAGTTGCAGCCCGCCGACCGTCCGAAGGCGGTGCCGCTCACGGGCTCGACGCAGGCGGGCGCCGAACCCG GCCAGATGCGGATCATCGACGCCGACGTCGAGCGCCCGAACGGCGCGAAGGTCGGCCGCGTCGTCGACGTGCTGATCGGC CGCGATGCGCAACCACAGGCGGTCGTGCTCGACGTCGGCGGCCTCGTCGATCCGGACCGGCGCACGATCGCCGCGAACTG GTCGGCGCTGCGCTTCGCGCCGAAGGACAAATCGCTGCGCGCGCTGCTCGACCTGAACGACGCGCAACTGAAGGCGTCGC CGCCCTATGCGGGCGACAAGCCGATCCTCGCCGTCTCGCCCGCGGCCGGCGGCGCTCCCGCCGCCGCGCCGGCCACCGCT CGAGCAGGTGCGAAACGATGA
Upstream 100 bases:
>100_bases CACAGGTTAAACTCTGTCCTCCCGCGATGCCCTTCGGGCGTCAGCCATCATCGCCAGCGGCGCGCCACCCGGCTCGCCCC CGTCCATGGAGTATTGCTTG
Downstream 100 bases:
>100_bases CGGTCCGGCATGCGGTCAGCGCGCGTAGCCTGCGCGCCCTCGACTGGCTCAACTTCTTCGTCGCGAACGTGCAGACAGGC TTCGGTCCGTTCATCGCGTC
Product: PRC-barrel domain protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MSGGFPRSAFRLPRPVAAAAPVVLATLALSGCALFRAPQASAPVVEAVAVPVEPASEPIAAPEPASAPEPAETAPPKKPH REAAPPRKPARVAPPAPAPAPAPAPLVTTRAIERSQVHALLDSEVRRGGKVIGRAVDMTADANGAPREMLVNLQGFMGVG DRKVSFPWKLFRFTPGGRHEPVILDMPATAQLQPADRPKAVPLTGSTQAGAEPGQMRIIDADVERPNGAKVGRVVDVLIG RDAQPQAVVLDVGGLVDPDRRTIAANWSALRFAPKDKSLRALLDLNDAQLKASPPYAGDKPILAVSPAAGGAPAAAPATA RAGAKR
Sequences:
>Translated_326_residues MSGGFPRSAFRLPRPVAAAAPVVLATLALSGCALFRAPQASAPVVEAVAVPVEPASEPIAAPEPASAPEPAETAPPKKPH REAAPPRKPARVAPPAPAPAPAPAPLVTTRAIERSQVHALLDSEVRRGGKVIGRAVDMTADANGAPREMLVNLQGFMGVG DRKVSFPWKLFRFTPGGRHEPVILDMPATAQLQPADRPKAVPLTGSTQAGAEPGQMRIIDADVERPNGAKVGRVVDVLIG RDAQPQAVVLDVGGLVDPDRRTIAANWSALRFAPKDKSLRALLDLNDAQLKASPPYAGDKPILAVSPAAGGAPAAAPATA RAGAKR >Mature_325_residues SGGFPRSAFRLPRPVAAAAPVVLATLALSGCALFRAPQASAPVVEAVAVPVEPASEPIAAPEPASAPEPAETAPPKKPHR EAAPPRKPARVAPPAPAPAPAPAPLVTTRAIERSQVHALLDSEVRRGGKVIGRAVDMTADANGAPREMLVNLQGFMGVGD RKVSFPWKLFRFTPGGRHEPVILDMPATAQLQPADRPKAVPLTGSTQAGAEPGQMRIIDADVERPNGAKVGRVVDVLIGR DAQPQAVVLDVGGLVDPDRRTIAANWSALRFAPKDKSLRALLDLNDAQLKASPPYAGDKPILAVSPAAGGAPAAAPATAR AGAKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33632; Mature: 33501
Theoretical pI: Translated: 10.82; Mature: 10.82
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGGFPRSAFRLPRPVAAAAPVVLATLALSGCALFRAPQASAPVVEAVAVPVEPASEPIA CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCCCC APEPASAPEPAETAPPKKPHREAAPPRKPARVAPPAPAPAPAPAPLVTTRAIERSQVHAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LDSEVRRGGKVIGRAVDMTADANGAPREMLVNLQGFMGVGDRKVSFPWKLFRFTPGGRHE HHHHHHHCCCEEHEEEEECCCCCCCCHHHHEEHHHHCCCCCCEECCCEEEEEECCCCCCC PVILDMPATAQLQPADRPKAVPLTGSTQAGAEPGQMRIIDADVERPNGAKVGRVVDVLIG CEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHC RDAQPQAVVLDVGGLVDPDRRTIAANWSALRFAPKDKSLRALLDLNDAQLKASPPYAGDK CCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCCEEEEECCCCCEEEECCCCCCCC PILAVSPAAGGAPAAAPATARAGAKR CEEEECCCCCCCCCCCCCHHHCCCCC >Mature Secondary Structure SGGFPRSAFRLPRPVAAAAPVVLATLALSGCALFRAPQASAPVVEAVAVPVEPASEPIA CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCCCC APEPASAPEPAETAPPKKPHREAAPPRKPARVAPPAPAPAPAPAPLVTTRAIERSQVHAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LDSEVRRGGKVIGRAVDMTADANGAPREMLVNLQGFMGVGDRKVSFPWKLFRFTPGGRHE HHHHHHHCCCEEHEEEEECCCCCCCCHHHHEEHHHHCCCCCCEECCCEEEEEECCCCCCC PVILDMPATAQLQPADRPKAVPLTGSTQAGAEPGQMRIIDADVERPNGAKVGRVVDVLIG CEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHC RDAQPQAVVLDVGGLVDPDRRTIAANWSALRFAPKDKSLRALLDLNDAQLKASPPYAGDK CCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCCEEEEECCCCCEEEECCCCCCCC PILAVSPAAGGAPAAAPATARAGAKR CEEEECCCCCCCCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA