| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811505
Identifier: 237811505
GI number: 237811505
Start: 1194804
End: 1196057
Strand: Reverse
Name: 237811505
Synonym: GBP346_A1235
Alternate gene names: NA
Gene position: 1196057-1194804 (Counterclockwise)
Preceding gene: 237811506
Following gene: 237811504
Centisome position: 29.18
GC content: 71.13
Gene sequence:
>1254_bases ATGACGGTCCGGCATGCGGTCAGCGCGCGTAGCCTGCGCGCCCTCGACTGGCTCAACTTCTTCGTCGCGAACGTGCAGAC AGGCTTCGGTCCGTTCATCGCGTCGTATCTCGCGTCGCACAAGTGGACGCAGGGCGAAATCGGCATGGTGCTGTCGATCG GCACGATCAGCGCGATGGTGAGCCAGGTGCCCGGCGGCGCGGCCGTCGATGCGCTGAAGAACAAGAAAGGCGCCGCCGCG TGGGCGATCGCCGCGATCATCCTGTCCGCGGTGCTGCTCGCCGCGAGCCCGACCGTCGTGCCCGTGATCGCGGCCGAGGT GTTCCACGGCTTCGCGAGCTGCATGCTCGTGCCGGCAATGGCGGCGATCTCGTTCGCGCTCGTCGGCCGCGAGAGCCTGG GCGACCGGCTCGGCCGCAACGCGCGCTGGGCGTCGCTCGGCAGCGCGGTCGCGGCGGGCCTGATGGGGCTCACGGGCGAG TACTTCTCCGCGCGCGCGGTGTTCTGGCTGACGGCGGCCCTCGCGCTGCCCGCGCTCGTCGCGCTCGCGATGATCGAGCC GACGCACCATCATCATCACGCGGCGCCACGCGCCGACGCCGACGAAGACGAAGACGAAGAACGCGAAACGCTGCGCGAAC TGCTGCGCGACAAGCGGATGCTGATCTTCGCCGCCTGCGTCGTGTTGTTCCATCTGTCGAACGCGGCGATGCTGAACCTC GCCGCGGGCGAAGTGACGGCGGGCATGGGCGAGAACGTGCAGCTCGTGATCGCCGCGTGCATCATCGTCCCGCAGGCGAT CGTCGCGATGCTCTCGCCGTGGGTCGGACGCTCCGCGCAGCGCTGGGGCCGCCGGCCGATCCTGCTGCTCGGTTTCGCCG CGCTGCCGCTGCGCGCGCTGCTGTTCGCCGGCGTCTCGAGCCCGTACCTGCTCGTGCCGGTGCAGATGCTCGACGGCATC AGCGCCGCCGTGTTCGGCGTGATGCTGCCGCTCATCGCGGCGGACGTCGCGGGCGGCAAGGGGCGCTACAACCTGTGCAT CGGGCTCTTCGGACTCGCGGCGGGCGTCGGCGCGACGCTCAGCACCGCGCTCGCCGGCTTCGCGGCCGACCACTTCGGCA ACGCGATGAGCTTCTTCGGGCTCGCCGCCGCGGGCGCGCTCGCGACGCTGCTCGTGTGGTTCGCGATGCCCGAGACGCGC GACGCGGCGCTCGCCGAAGACGCTCGGCACTCGAGCGCCGAGCCGGCGCAGTAA
Upstream 100 bases:
>100_bases CGCCGCCCTATGCGGGCGACAAGCCGATCCTCGCCGTCTCGCCCGCGGCCGGCGGCGCTCCCGCCGCCGCGCCGGCCACC GCTCGAGCAGGTGCGAAACG
Downstream 100 bases:
>100_bases CGTCCCGCCCGTGATGCGACGGCGCGCGGGACGCGATGCGGGATGCGGCGGCACATGCATGCGTGCGCCCGGCGGCGTTG CAGGCGATATGGGCGATATG
Product: transporter, major facilitator family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MTVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAMAAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGE YFSARAVFWLTAALALPALVALAMIEPTHHHHHAAPRADADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAMLNL AAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQMLDGI SAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPETR DAALAEDARHSSAEPAQ
Sequences:
>Translated_417_residues MTVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAA WAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAMAAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGE YFSARAVFWLTAALALPALVALAMIEPTHHHHHAAPRADADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAMLNL AAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQMLDGI SAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPETR DAALAEDARHSSAEPAQ >Mature_416_residues TVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMVSQVPGGAAVDALKNKKGAAAW AIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAMAAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGEY FSARAVFWLTAALALPALVALAMIEPTHHHHHAAPRADADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAMLNLA AGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQMLDGIS AAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPETRD AALAEDARHSSAEPAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43442; Mature: 43311
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMV CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGEYFSARAVFWLTAALALPALV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALAMIEPTHHHHHAAPRADADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAMLNL HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEE AAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRAL ECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEHHHHHHHHHHH LFAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATL HHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH STALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPETRDAALAEDARHSSAEPAQ HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC >Mature Secondary Structure TVRHAVSARSLRALDWLNFFVANVQTGFGPFIASYLASHKWTQGEIGMVLSIGTISAMV CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHH SQVPGGAAVDALKNKKGAAAWAIAAIILSAVLLAASPTVVPVIAAEVFHGFASCMLVPAM HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAISFALVGRESLGDRLGRNARWASLGSAVAAGLMGLTGEYFSARAVFWLTAALALPALV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALAMIEPTHHHHHAAPRADADEDEDEERETLRELLRDKRMLIFAACVVLFHLSNAAMLNL HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEE AAGEVTAGMGENVQLVIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRAL ECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHCCCCEEEHHHHHHHHHHH LFAGVSSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATL HHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH STALAGFAADHFGNAMSFFGLAAAGALATLLVWFAMPETRDAALAEDARHSSAEPAQ HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]