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The map label for this gene is recU [H]

Identifier: 229918739

GI number: 229918739

Start: 2985395

End: 2986021

Strand: Direct

Name: recU [H]

Synonym: EAT1b_3027

Alternate gene names: 229918739

Gene position: 2985395-2986021 (Clockwise)

Preceding gene: 229918738

Following gene: 229918740

Centisome position: 99.52

GC content: 45.3

Gene sequence:

>627_bases
ATGTATGGGGTGACGACATTGTTCCATTATCCAAACGGTAAAAAGGCAAACGTGACAAAGACAACAAAGGGGGAAGGAAT
TTCGAAGCAATCATCGAATTCTCAAACCTATGCGAATCGCGGGATGAACTTGGAGACGCTTTTAAATGAAACGAATGAAT
TTTATCGGATTCATCAACGAGCCGTCATCCACAAAAAACCAACCCCTCTTCAAATCGTCAAAGTCGACTACCCGAAGCGA
AGTGCCGCCAAAGTGACGGAAGCCTATTTCAAACAGGCATCTACGACCGATTACAACGGTGTTTATCGTGGCAGGTACAT
TGACTTTGAAGCGAAAGAAACGAATAATAAGACGTCGTTTCCGCTCGGCAATTTCCATGACCACCAAATCGCCCACATGC
GTGAGTGTGAACGTCATGGAGGGATTTGTTTTGTCATCATCCGCTTTAGTCGCTATAATACGCAATATGTATTGACCACC
GAGCAACTTGTTCAGTGGTGGGAACAACGATTAACGGGGCGAAAATCGATTCCGCTCAGCTTTATCGAAAAGGAAGCGAT
TGAAGTTCCGACGAGAGCCTTGCCGTCGATTGATTATTTGACGGTGCTCGATCAATGGCTCGATTGA

Upstream 100 bases:

>100_bases
TACGATATGTGTTGCGGTAAATCCACACAAGTGTCGACCGACAGAAGTCGACAATCAGACCTGAGACGGAAGGAACGAGT
GGACCGACCTGTTAATATGT

Downstream 100 bases:

>100_bases
ATAGAAGGAGTGAACCATGAATGGAGCGAAGTAGGGTCGCACGTCGACAAGATTCGACGACGAATAAACGCAAAAAAACT
GGGAAACAACCAAAGACGAA

Product: Holliday junction-specific endonuclease

Products: NA

Alternate protein names: Recombination protein U homolog [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MYGVTTLFHYPNGKKANVTKTTKGEGISKQSSNSQTYANRGMNLETLLNETNEFYRIHQRAVIHKKPTPLQIVKVDYPKR
SAAKVTEAYFKQASTTDYNGVYRGRYIDFEAKETNNKTSFPLGNFHDHQIAHMRECERHGGICFVIIRFSRYNTQYVLTT
EQLVQWWEQRLTGRKSIPLSFIEKEAIEVPTRALPSIDYLTVLDQWLD

Sequences:

>Translated_208_residues
MYGVTTLFHYPNGKKANVTKTTKGEGISKQSSNSQTYANRGMNLETLLNETNEFYRIHQRAVIHKKPTPLQIVKVDYPKR
SAAKVTEAYFKQASTTDYNGVYRGRYIDFEAKETNNKTSFPLGNFHDHQIAHMRECERHGGICFVIIRFSRYNTQYVLTT
EQLVQWWEQRLTGRKSIPLSFIEKEAIEVPTRALPSIDYLTVLDQWLD
>Mature_208_residues
MYGVTTLFHYPNGKKANVTKTTKGEGISKQSSNSQTYANRGMNLETLLNETNEFYRIHQRAVIHKKPTPLQIVKVDYPKR
SAAKVTEAYFKQASTTDYNGVYRGRYIDFEAKETNNKTSFPLGNFHDHQIAHMRECERHGGICFVIIRFSRYNTQYVLTT
EQLVQWWEQRLTGRKSIPLSFIEKEAIEVPTRALPSIDYLTVLDQWLD

Specific function: Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair

COG id: COG3331

COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004612
- InterPro:   IPR011335 [H]

Pfam domain/function: PF03838 RecU [H]

EC number: NA

Molecular weight: Translated: 24176; Mature: 24176

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGVTTLFHYPNGKKANVTKTTKGEGISKQSSNSQTYANRGMNLETLLNETNEFYRIHQR
CCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
AVIHKKPTPLQIVKVDYPKRSAAKVTEAYFKQASTTDYNGVYRGRYIDFEAKETNNKTSF
HHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEECCEEEEEECCCCCCCCCC
PLGNFHDHQIAHMRECERHGGICFVIIRFSRYNTQYVLTTEQLVQWWEQRLTGRKSIPLS
CCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEHHHHHHHHHHHHCCCCCCCHH
FIEKEAIEVPTRALPSIDYLTVLDQWLD
HHHHHHHHCCHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MYGVTTLFHYPNGKKANVTKTTKGEGISKQSSNSQTYANRGMNLETLLNETNEFYRIHQR
CCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
AVIHKKPTPLQIVKVDYPKRSAAKVTEAYFKQASTTDYNGVYRGRYIDFEAKETNNKTSF
HHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEECCEEEEEECCCCCCCCCC
PLGNFHDHQIAHMRECERHGGICFVIIRFSRYNTQYVLTTEQLVQWWEQRLTGRKSIPLS
CCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEHHHHHHHHHHHHCCCCCCCHH
FIEKEAIEVPTRALPSIDYLTVLDQWLD
HHHHHHHHCCHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA