Click here to switch to the map view.

The map label for this gene is qcrC [H]

Identifier: 229918719

GI number: 229918719

Start: 2966129

End: 2966923

Strand: Direct

Name: qcrC [H]

Synonym: EAT1b_3006

Alternate gene names: 229918719

Gene position: 2966129-2966923 (Clockwise)

Preceding gene: 229918718

Following gene: 229918720

Centisome position: 98.87

GC content: 48.68

Gene sequence:

>795_bases
ATGCATCGCGGTAAAGGGATGAAATTTGTAACCGACTCTCGAGTAGGAATCTCGAATCGGAAACAAAACATTGCAAAAGA
CTATTCAGAATACCCAGGACGCACAGAGGCGTTCTGGCCGAACTTCTTGCTTAAAGAGTGGATGGTAGGGTCGGTCTTCT
TGATCGGATTCATCGCTTTGACAATTGTCGAGGCACCACCGCTTCAAAATATCGCCGATCCAACGAACACGTCATACATT
CCGTTGCCGGACTGGTATTTCTTGTTCTTGTATCAATTACTCAAATATCAATTCGCTGCTGGGGACTGGATCTTACTCGG
TACAGTCATTATTCCAGGTTTGGCGTTCACGGCACTTCTCGTTGCCCCATGGCTTGACCAAGGTCTCGAGCGTCGACCGG
CGAAACGACCAGTCGCGATCAGTTTCATGTTACTTGGAATTCTCTCGGTCTTCTACTTGACTTGGGAATCTGTTCAAACG
ACACACTGGGATCAAGTTCATGCACAAGGTGAGCTTCAAATTCCAGGTGAAGGTCCTGAAATCGATACAGCGGCTCCAGG
ATATGAGATTTATTCGGCTCAATCTTGCGTCAACTGTCACGGTCAAAACCTAGAAGGTGGAGCAGCGGCTCCAGCACTCG
TCGGAACGCAGTATACGGCTGAAGAAATCGCGGAAATCGCGGTCAACGGTGTCGGTACGATGCCAGCTGGTCAGTGGGAT
GGTTCAGATGAAGATCTCCAAGCCATGTCTGAGTTCATCGCTTCATACGGTGAAGGCGGCGAAAATAACAAGTAA

Upstream 100 bases:

>100_bases
ATTGTTCGGACTGTTGGGAGCCCACTTCTTGATGATTCGTAAACAAGGGGTTTCTGGACCGCTATAAGCCGATTCGAGGA
GAAAAAGGAGGAGAAACGAT

Downstream 100 bases:

>100_bases
GTCTTCAAGTGTAGCCTGAATATCGGGCTACACTTTTTTACTTCTGCACGACGCATACGATAAACTGAAGAAAAAGGATT
GAGACAATGAACCCCATGTT

Product: cytochrome c class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MHRGKGMKFVTDSRVGISNRKQNIAKDYSEYPGRTEAFWPNFLLKEWMVGSVFLIGFIALTIVEAPPLQNIADPTNTSYI
PLPDWYFLFLYQLLKYQFAAGDWILLGTVIIPGLAFTALLVAPWLDQGLERRPAKRPVAISFMLLGILSVFYLTWESVQT
THWDQVHAQGELQIPGEGPEIDTAAPGYEIYSAQSCVNCHGQNLEGGAAAPALVGTQYTAEEIAEIAVNGVGTMPAGQWD
GSDEDLQAMSEFIASYGEGGENNK

Sequences:

>Translated_264_residues
MHRGKGMKFVTDSRVGISNRKQNIAKDYSEYPGRTEAFWPNFLLKEWMVGSVFLIGFIALTIVEAPPLQNIADPTNTSYI
PLPDWYFLFLYQLLKYQFAAGDWILLGTVIIPGLAFTALLVAPWLDQGLERRPAKRPVAISFMLLGILSVFYLTWESVQT
THWDQVHAQGELQIPGEGPEIDTAAPGYEIYSAQSCVNCHGQNLEGGAAAPALVGTQYTAEEIAEIAVNGVGTMPAGQWD
GSDEDLQAMSEFIASYGEGGENNK
>Mature_264_residues
MHRGKGMKFVTDSRVGISNRKQNIAKDYSEYPGRTEAFWPNFLLKEWMVGSVFLIGFIALTIVEAPPLQNIADPTNTSYI
PLPDWYFLFLYQLLKYQFAAGDWILLGTVIIPGLAFTALLVAPWLDQGLERRPAKRPVAISFMLLGILSVFYLTWESVQT
THWDQVHAQGELQIPGEGPEIDTAAPGYEIYSAQSCVNCHGQNLEGGAAAPALVGTQYTAEEIAEIAVNGVGTMPAGQWD
GSDEDLQAMSEFIASYGEGGENNK

Specific function: Component of the menaquinol-cytochrome c reductase complex [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR012049 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 29040; Mature: 29040

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS51007 CYTC ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRGKGMKFVTDSRVGISNRKQNIAKDYSEYPGRTEAFWPNFLLKEWMVGSVFLIGFIAL
CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TIVEAPPLQNIADPTNTSYIPLPDWYFLFLYQLLKYQFAAGDWILLGTVIIPGLAFTALL
HHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VAPWLDQGLERRPAKRPVAISFMLLGILSVFYLTWESVQTTHWDQVHAQGELQIPGEGPE
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEECCCCCCC
IDTAAPGYEIYSAQSCVNCHGQNLEGGAAAPALVGTQYTAEEIAEIAVNGVGTMPAGQWD
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
GSDEDLQAMSEFIASYGEGGENNK
CCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHRGKGMKFVTDSRVGISNRKQNIAKDYSEYPGRTEAFWPNFLLKEWMVGSVFLIGFIAL
CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TIVEAPPLQNIADPTNTSYIPLPDWYFLFLYQLLKYQFAAGDWILLGTVIIPGLAFTALL
HHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VAPWLDQGLERRPAKRPVAISFMLLGILSVFYLTWESVQTTHWDQVHAQGELQIPGEGPE
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEECCCCCCC
IDTAAPGYEIYSAQSCVNCHGQNLEGGAAAPALVGTQYTAEEIAEIAVNGVGTMPAGQWD
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
GSDEDLQAMSEFIASYGEGGENNK
CCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592464; 8760912; 9384377 [H]