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The map label for this gene is xerC [H]

Identifier: 229918620

GI number: 229918620

Start: 2871920

End: 2872801

Strand: Direct

Name: xerC [H]

Synonym: EAT1b_2907

Alternate gene names: 229918620

Gene position: 2871920-2872801 (Clockwise)

Preceding gene: 229918619

Following gene: 229918621

Centisome position: 95.73

GC content: 50.11

Gene sequence:

>882_bases
ATGGGATTTTTAGAGGATCGACAATCCTTTTTACGCTACTGCCAAATTGAACGTCGACTGTCTCCTCATACGAAACGCTC
CTACGAGCAAACGCTCGACCAGTACGCCGCATATTGCCAATCGACGCATCAAGATCCCTACGATGCTCAGACGGCGCGGC
GTTATTTATATGTCCTTTATGAGAAACAATTGGCCGCGTCCACGGTGTCCCAAAAAGTATCTTGTTTCAAGCAATTCGGG
AAGTTTATGGCAAGAGAACAAGGTGGAGAACCGTTGTTTCACGACCTGACCTCACCGAAAAAGAAACAGTCCTTGCCGAC
CTTTGCCGTCCCGACAGAAGTCGAGCAATTGTTAGAGGCTGCCTCGAGGCAAGACGACCCGTTTTTACAGGCGAGGGACG
TCGCCATCATAGAAGTACTCTATGGGACGGGGATCCGCGTCGCCGAACTGTGTGGGATGAACCTTTCTTCATTCGATGAG
GTCTTGTCCTTCGTCCATGTGATGGGAAAAGGGAAGAAAGAACGGTATGTCCCAATCGGGCAATATGCCGTACAAGCTTT
GCAGCGTTATATCGAATTACGTAAAGGTGTCGGGCTCCCGACAGAAACCGCATTATTTTTGAGTCAAAAAGGGAATCGGA
TGACAACAGACCAAATCCGCTATGTCATGAAGCGTTTGAGAAAAGACAGTGGGGTACATAAACCACTTACCCCGCACTCG
TTGCGACACAGCTTTGCGACGGACTTGTTAGAGCGGGGAGCGGACTTGCGTGCCGTCCAAGAGTTACTCGGGCATGAGTC
CTTGTCGACGACCGGACGGTACACCCATGTATCGACCGAACGACTTCGGTCGATTTATCAAGCGACACATCCAAGAAAGT
AG

Upstream 100 bases:

>100_bases
TATTGAACGGCTATCTATTGTCACCTTACATTCTGTATGCTATGCTAATTTCGATTTGACGAGAACATGCGTTTTTAAGA
GTCATCGAGGAGGCGATAAA

Downstream 100 bases:

>100_bases
GAGGTTACGATATGTTTCATGCAACAACGATTTTTGCAGTTCGACACAATGGCCAATGTGCGATGAGTGGAGATGGCCAA
GTCACATTCGGGAATGCCGT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MGFLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLYEKQLAASTVSQKVSCFKQFG
KFMAREQGGEPLFHDLTSPKKKQSLPTFAVPTEVEQLLEAASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDE
VLSFVHVMGKGKKERYVPIGQYAVQALQRYIELRKGVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHS
LRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPRK

Sequences:

>Translated_293_residues
MGFLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLYEKQLAASTVSQKVSCFKQFG
KFMAREQGGEPLFHDLTSPKKKQSLPTFAVPTEVEQLLEAASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDE
VLSFVHVMGKGKKERYVPIGQYAVQALQRYIELRKGVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHS
LRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPRK
>Mature_292_residues
GFLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLYEKQLAASTVSQKVSCFKQFGK
FMAREQGGEPLFHDLTSPKKKQSLPTFAVPTEVEQLLEAASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEV
LSFVHVMGKGKKERYVPIGQYAVQALQRYIELRKGVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHSL
RHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPRK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=35.2739726027397, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1789261, Length=300, Percent_Identity=38.3333333333333, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1790767, Length=182, Percent_Identity=28.021978021978, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790768, Length=159, Percent_Identity=27.6729559748428, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33602; Mature: 33471

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLY
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
EKQLAASTVSQKVSCFKQFGKFMAREQGGEPLFHDLTSPKKKQSLPTFAVPTEVEQLLEA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHH
ASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVPIG
HCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
QYAVQALQRYIELRKGVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
LRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPRK
HHHHHHHHHHHCCCCHHHHHHHHCCCHHCCCCCEEECCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GFLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLY
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
EKQLAASTVSQKVSCFKQFGKFMAREQGGEPLFHDLTSPKKKQSLPTFAVPTEVEQLLEA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHH
ASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVPIG
HCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
QYAVQALQRYIELRKGVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
LRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPRK
HHHHHHHHHHHCCCCHHHHHHHHCCCHHCCCCCEEECCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]