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The map label for this gene is rpoZ

Identifier: 229918577

GI number: 229918577

Start: 2829098

End: 2829307

Strand: Direct

Name: rpoZ

Synonym: EAT1b_2864

Alternate gene names: 229918577

Gene position: 2829098-2829307 (Clockwise)

Preceding gene: 229918576

Following gene: 229918578

Centisome position: 94.31

GC content: 45.71

Gene sequence:

>210_bases
ATGTTATACCCTTCGATTGATGCCTTACAACGTACTATCCCGTCAAAATACACGATCGTTACGGTCGCTGCGAAACGGGC
GCGTCAGATTCAAGATGGAAAAGCACCGAAAGTCGCCGAGCCAAAATCATATAAGCCGGTCGGTCAAGCGTTAGAAGAAC
TATTTTCGGGTGATACGACAATCATCGTGAACGAAAAAAACAACGGATGA

Upstream 100 bases:

>100_bases
ACAAAGCCATCGATCGAATTAAAGCGATCGTGACAGCTGAGCATTGTAAACGTGAACGTGTTGCGTCACTCTATAAAAAA
GCCATGATGGAGGTCATTTA

Downstream 100 bases:

>100_bases
AGTGTGACCCAAGTCGTTTGCGACTTGGGTCTCATTGTCTATAAGGGGGAGTTTGGGAATGGTGAAGGATCGTACTATTT
TGTTATGTGTGAGTGGTGGC

Product: DNA-directed RNA polymerase, omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MLYPSIDALQRTIPSKYTIVTVAAKRARQIQDGKAPKVAEPKSYKPVGQALEELFSGDTTIIVNEKNNG

Sequences:

>Translated_69_residues
MLYPSIDALQRTIPSKYTIVTVAAKRARQIQDGKAPKVAEPKSYKPVGQALEELFSGDTTIIVNEKNNG
>Mature_69_residues
MLYPSIDALQRTIPSKYTIVTVAAKRARQIQDGKAPKVAEPKSYKPVGQALEELFSGDTTIIVNEKNNG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_EXISA (C4L5X2)

Other databases:

- EMBL:   CP001615
- RefSeq:   YP_002887223.1
- GeneID:   7870119
- GenomeReviews:   CP001615_GR
- KEGG:   eat:EAT1b_2864
- OMA:   FEREDSE
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7561; Mature: 7561

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYPSIDALQRTIPSKYTIVTVAAKRARQIQDGKAPKVAEPKSYKPVGQALEELFSGDTT
CCCCCHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
IIVNEKNNG
EEEECCCCC
>Mature Secondary Structure
MLYPSIDALQRTIPSKYTIVTVAAKRARQIQDGKAPKVAEPKSYKPVGQALEELFSGDTT
CCCCCHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
IIVNEKNNG
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA