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The map label for this gene is ylmE [H]

Identifier: 229918555

GI number: 229918555

Start: 2805917

End: 2806570

Strand: Direct

Name: ylmE [H]

Synonym: EAT1b_2842

Alternate gene names: 229918555

Gene position: 2805917-2806570 (Clockwise)

Preceding gene: 229918554

Following gene: 229918556

Centisome position: 93.53

GC content: 47.25

Gene sequence:

>654_bases
GTGAGTATTTCAGATAATGTAAAACAAGTTCAATCAATCATTTCATCACACGTTCAAGAAGTTGAGCCGACACTCATCGC
CGTCACGAAATCCGTAGGCGTAGATGTGGCTAACGCTCTTTACGCAGAAGGAATTCGTGATTTCGGAGAAAACCGTCCGG
ATGCACTGCTCGAGAAAGTTGAAGGGATGCCGAAGGATGCCAGATTTCATTTTATCGGTACGTTACAGACGCGAAAAGTG
AGACAAATCATTGATTACGTCGCGGCCATCCACTCTCTTGACCGGTTGTCTCTCGCAGCAGAGATTGACAAGCGCGCGAA
CGGGACAATCGATTGTTTCGTTCAAGTGAACACGTCAGGAGAAGATTCAAAACATGGTCTCGAAATAGAGGAAGTCGTGC
CCTTCATCGAGAACTGTAAACAGTATCCTCATATTCGAATCATCGGGCTGATGACGATGGCACCGTTCACTGAAGAAGAG
TCCGTTCTTCGTGAAACGTTCCGCCGTCTCCGTCATCTACGTGATGAAGTGAAGGCAAATGCGTATGACCACGCACCATG
CACGGAGCTGTCGATGGGGATGTCAAACGATTATCCAATCGCGATTGAAGAAGGCGCATCGTTTGTTCGTATTGGTACCG
TACTTGTGCAATAA

Upstream 100 bases:

>100_bases
AATCGAATTTAACGACTGGCGCGGACAGCCCGTTTTTCTCCTATCGAGACGGAGAGACGAAACGTCGATTTGCGGCAGTC
ATCGTCAAGGAGCGGAAATC

Downstream 100 bases:

>100_bases
TATATCTTAAGGAGGAATCCGTTATGTCAATCAAAAACAAAATGAAAGATTTCTTTGGACTCGAAGAAGATCCGAACAGC
ACATATGAGGAAGAAGAGTA

Product: alanine racemase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSISDNVKQVQSIISSHVQEVEPTLIAVTKSVGVDVANALYAEGIRDFGENRPDALLEKVEGMPKDARFHFIGTLQTRKV
RQIIDYVAAIHSLDRLSLAAEIDKRANGTIDCFVQVNTSGEDSKHGLEIEEVVPFIENCKQYPHIRIIGLMTMAPFTEEE
SVLRETFRRLRHLRDEVKANAYDHAPCTELSMGMSNDYPIAIEEGASFVRIGTVLVQ

Sequences:

>Translated_217_residues
MSISDNVKQVQSIISSHVQEVEPTLIAVTKSVGVDVANALYAEGIRDFGENRPDALLEKVEGMPKDARFHFIGTLQTRKV
RQIIDYVAAIHSLDRLSLAAEIDKRANGTIDCFVQVNTSGEDSKHGLEIEEVVPFIENCKQYPHIRIIGLMTMAPFTEEE
SVLRETFRRLRHLRDEVKANAYDHAPCTELSMGMSNDYPIAIEEGASFVRIGTVLVQ
>Mature_216_residues
SISDNVKQVQSIISSHVQEVEPTLIAVTKSVGVDVANALYAEGIRDFGENRPDALLEKVEGMPKDARFHFIGTLQTRKVR
QIIDYVAAIHSLDRLSLAAEIDKRANGTIDCFVQVNTSGEDSKHGLEIEEVVPFIENCKQYPHIRIIGLMTMAPFTEEES
VLRETFRRLRHLRDEVKANAYDHAPCTELSMGMSNDYPIAIEEGASFVRIGTVLVQ

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=229, Percent_Identity=32.3144104803493, Blast_Score=108, Evalue=4e-24,
Organism=Escherichia coli, GI1789321, Length=226, Percent_Identity=30.0884955752212, Blast_Score=88, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17533025, Length=206, Percent_Identity=33.495145631068, Blast_Score=98, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=205, Percent_Identity=36.0975609756098, Blast_Score=104, Evalue=8e-24,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=32.3943661971831, Blast_Score=95, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24256; Mature: 24125

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISDNVKQVQSIISSHVQEVEPTLIAVTKSVGVDVANALYAEGIRDFGENRPDALLEKV
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHH
EGMPKDARFHFIGTLQTRKVRQIIDYVAAIHSLDRLSLAAEIDKRANGTIDCFVQVNTSG
HCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
EDSKHGLEIEEVVPFIENCKQYPHIRIIGLMTMAPFTEEESVLRETFRRLRHLRDEVKAN
CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
AYDHAPCTELSMGMSNDYPIAIEEGASFVRIGTVLVQ
CCCCCCCHHHHCCCCCCCCEEECCCCCEEEHHHHHCC
>Mature Secondary Structure 
SISDNVKQVQSIISSHVQEVEPTLIAVTKSVGVDVANALYAEGIRDFGENRPDALLEKV
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHH
EGMPKDARFHFIGTLQTRKVRQIIDYVAAIHSLDRLSLAAEIDKRANGTIDCFVQVNTSG
HCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
EDSKHGLEIEEVVPFIENCKQYPHIRIIGLMTMAPFTEEESVLRETFRRLRHLRDEVKAN
CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
AYDHAPCTELSMGMSNDYPIAIEEGASFVRIGTVLVQ
CCCCCCCHHHHCCCCCCCCEEECCCCCEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]