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The map label for this gene is ylmD [H]

Identifier: 229918554

GI number: 229918554

Start: 2805159

End: 2805920

Strand: Direct

Name: ylmD [H]

Synonym: EAT1b_2841

Alternate gene names: 229918554

Gene position: 2805159-2805920 (Clockwise)

Preceding gene: 229918553

Following gene: 229918555

Centisome position: 93.51

GC content: 54.99

Gene sequence:

>762_bases
ATGCAACTGCTACATACTTGGGAAACCGAAACAACCCGTTATCATGCTTACGTGACGACACGAACAGATGGACACAATGC
GGGAAACGTCGGACTGCACGTGGGCGATGAAATCGACCGCGTCGTCGAAAATCGGCAACAGTTCTTTCAACAAGCCGGGC
TCGCGTTAGAGGACTCCGTGTGGGCGGATCAAGTGCATGGCACAGCGGTCCAGGTCGTTGATTCGTCGGACAAAGGTAAG
GGTGCGTTCCGATATGAAGAGGCGATCCCGAAAACAGACGGTCTTCTCACAACCGAAGACGCGCTACCGTTAGCCCTCGT
CTTTGCTGACTGTGTGCCTCTCTTCTTCTGTGCGAAAGATCATGGGGTCATCGGCATCGCTCATGCCGGGTGGAAGGGGA
CGGTCGGAAACATCGTCAAGACGATGATGCAGACGTTTGCTGAGAAGGGAATCGAGGCGCCCGATGTGGACATGCTCGTC
GGTCCGTCCATCTCAGGAGATGACTACGAGGTCGATGGTCGTGTCCTGCAGGCCGTCCGGGATGTTTCGCCGATTGCCTA
TGAACGGGCGGTGCGAAACGAGTCGGGAGACCACGCCCTCTTGTCCCTTCAAACCGTCAATGAAGTATTGGCAAAAGAAC
ATGACACTGCGGTCATGCAATCGAATTTAACGACTGGCGCGGACAGCCCGTTTTTCTCCTATCGAGACGGAGAGACGAAA
CGTCGATTTGCGGCAGTCATCGTCAAGGAGCGGAAATCGTGA

Upstream 100 bases:

>100_bases
AGACGAGACGATCAACATCCCTGCGTTTGTGAGACAACGCCGTAACTAAACAACTAGGGGTGCCGGTACTCGGCATCCCT
TTTTCTAAAAGGAGAGACCG

Downstream 100 bases:

>100_bases
GTATTTCAGATAATGTAAAACAAGTTCAATCAATCATTTCATCACACGTTCAAGAAGTTGAGCCGACACTCATCGCCGTC
ACGAAATCCGTAGGCGTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MQLLHTWETETTRYHAYVTTRTDGHNAGNVGLHVGDEIDRVVENRQQFFQQAGLALEDSVWADQVHGTAVQVVDSSDKGK
GAFRYEEAIPKTDGLLTTEDALPLALVFADCVPLFFCAKDHGVIGIAHAGWKGTVGNIVKTMMQTFAEKGIEAPDVDMLV
GPSISGDDYEVDGRVLQAVRDVSPIAYERAVRNESGDHALLSLQTVNEVLAKEHDTAVMQSNLTTGADSPFFSYRDGETK
RRFAAVIVKERKS

Sequences:

>Translated_253_residues
MQLLHTWETETTRYHAYVTTRTDGHNAGNVGLHVGDEIDRVVENRQQFFQQAGLALEDSVWADQVHGTAVQVVDSSDKGK
GAFRYEEAIPKTDGLLTTEDALPLALVFADCVPLFFCAKDHGVIGIAHAGWKGTVGNIVKTMMQTFAEKGIEAPDVDMLV
GPSISGDDYEVDGRVLQAVRDVSPIAYERAVRNESGDHALLSLQTVNEVLAKEHDTAVMQSNLTTGADSPFFSYRDGETK
RRFAAVIVKERKS
>Mature_253_residues
MQLLHTWETETTRYHAYVTTRTDGHNAGNVGLHVGDEIDRVVENRQQFFQQAGLALEDSVWADQVHGTAVQVVDSSDKGK
GAFRYEEAIPKTDGLLTTEDALPLALVFADCVPLFFCAKDHGVIGIAHAGWKGTVGNIVKTMMQTFAEKGIEAPDVDMLV
GPSISGDDYEVDGRVLQAVRDVSPIAYERAVRNESGDHALLSLQTVNEVLAKEHDTAVMQSNLTTGADSPFFSYRDGETK
RRFAAVIVKERKS

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Escherichia coli, GI1788945, Length=239, Percent_Identity=28.4518828451883, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 27737; Mature: 27737

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLLHTWETETTRYHAYVTTRTDGHNAGNVGLHVGDEIDRVVENRQQFFQQAGLALEDSV
CCCEECCCCCCEEEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCH
WADQVHGTAVQVVDSSDKGKGAFRYEEAIPKTDGLLTTEDALPLALVFADCVPLFFCAKD
HHHHHCCCEEEEEECCCCCCCCEEHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHEECC
HGVIGIAHAGWKGTVGNIVKTMMQTFAEKGIEAPDVDMLVGPSISGDDYEVDGRVLQAVR
CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEECCHHHHHHHH
DVSPIAYERAVRNESGDHALLSLQTVNEVLAKEHDTAVMQSNLTTGADSPFFSYRDGETK
HCCHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHH
RRFAAVIVKERKS
HHHHHHHHHCCCC
>Mature Secondary Structure
MQLLHTWETETTRYHAYVTTRTDGHNAGNVGLHVGDEIDRVVENRQQFFQQAGLALEDSV
CCCEECCCCCCEEEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCH
WADQVHGTAVQVVDSSDKGKGAFRYEEAIPKTDGLLTTEDALPLALVFADCVPLFFCAKD
HHHHHCCCEEEEEECCCCCCCCEEHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHEECC
HGVIGIAHAGWKGTVGNIVKTMMQTFAEKGIEAPDVDMLVGPSISGDDYEVDGRVLQAVR
CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEECCHHHHHHHH
DVSPIAYERAVRNESGDHALLSLQTVNEVLAKEHDTAVMQSNLTTGADSPFFSYRDGETK
HCCHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHH
RRFAAVIVKERKS
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]