Click here to switch to the map view.

The map label for this gene is ylbL [H]

Identifier: 229918537

GI number: 229918537

Start: 2787353

End: 2788345

Strand: Direct

Name: ylbL [H]

Synonym: EAT1b_2824

Alternate gene names: 229918537

Gene position: 2787353-2788345 (Clockwise)

Preceding gene: 229918536

Following gene: 229918539

Centisome position: 92.92

GC content: 51.16

Gene sequence:

>993_bases
ATGAAATCGTTAAAGATCGGTCTCGGTTTACTCGTCACAGTTCTTCTCTTCCTGTTCGTCCCACTTCCTTACTACATCTC
TTCACCCGGAGCGGCGACCTCAATTGAAGAGTTCCTGACCGTCCAGGGTGGCGAAAAAGAGGATGGGGAACTGATGATGG
TGACGATCTCCCAACGCCGTGCGACTCCGTTTTGGTTAGTGGAAAGTTGGGTGACCCCGTTCACGGAAGCGAATTTATCC
AGTCGCTATTTATATGATGGAGAGAGTGAGGCAGACTATGAACGTCGCCAACAATTATTGATGGACTCCTCTCAACAAGC
GGCGGTTCAATACGCCTATCAGTTAGCAGATCAAGACGTGACGGTCGATTTCGAGGGGATTTATGTATCCGCACCGATTC
CCGGGTCCCTTGCGGCCAATACGTTGAAACCGGGTGATGTCATCACGGCCATCGATGGGATGTCCTTTGCCACTCGCGTC
GACTTTTTGAATCGCGTTTCGGAATTTGATGCGGGCGATGAAGTGGAGTTGACGATTGAACGAGACGGCGAAGAACGTGT
CGTGCAAACGCTCATTCAGCCGATCGATCAAAGTGGGGATCGTGTCGGGATTGGAATCTATGAGCCGCTTCCCGTTCAAG
AAATCACAGCTGATCCCGAAGTCGATGTCGCTTTGACGAATGTCGGTGGTCCGTCTGCAGGATTGATGTTCACGTTAGAA
ATCTATGATCAATTGACGCCAGGTGACTTGGCAAATGGAAAACGGATTGCCGGAACGGGGACGGTCGATGAGGAAGGGAA
TGTTGGACCTATCGGTGGTGCTTGGCAAAAGATAGTCGCCGCCGATGAGGAGAAAGCGGAAGTCTTCTTTGTGCCGGCCG
GTTCGAACTATGAAGAGGCGCTGGAATCACGAGACCGTCTCGACAGTGACATTGAAGTCGTCCCTGTCAAGACGGTCGAG
GATGCGATTCGTTATTTAGAAGAGATGAACTGA

Upstream 100 bases:

>100_bases
TTGTCAAAGAAGTGGCGAAATATGGGGCGTCGGTCAGTGAGCTCGTACCGGAACAGGTTGAAATTGCCTTACGTAAAAAG
TATCAAGTGAGTTCGGGACA

Downstream 100 bases:

>100_bases
GGGCGTTGACGGTGCTCGATCAACGCGTCATCTTGAAGTGGGAGTCGATATGCTTCGGTGACACGAGCTTCGAAATCGAG
CCGGGCATCGAACTTACTGA

Product: PDZ/DHR/GLGF domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKSLKIGLGLLVTVLLFLFVPLPYYISSPGAATSIEEFLTVQGGEKEDGELMMVTISQRRATPFWLVESWVTPFTEANLS
SRYLYDGESEADYERRQQLLMDSSQQAAVQYAYQLADQDVTVDFEGIYVSAPIPGSLAANTLKPGDVITAIDGMSFATRV
DFLNRVSEFDAGDEVELTIERDGEERVVQTLIQPIDQSGDRVGIGIYEPLPVQEITADPEVDVALTNVGGPSAGLMFTLE
IYDQLTPGDLANGKRIAGTGTVDEEGNVGPIGGAWQKIVAADEEKAEVFFVPAGSNYEEALESRDRLDSDIEVVPVKTVE
DAIRYLEEMN

Sequences:

>Translated_330_residues
MKSLKIGLGLLVTVLLFLFVPLPYYISSPGAATSIEEFLTVQGGEKEDGELMMVTISQRRATPFWLVESWVTPFTEANLS
SRYLYDGESEADYERRQQLLMDSSQQAAVQYAYQLADQDVTVDFEGIYVSAPIPGSLAANTLKPGDVITAIDGMSFATRV
DFLNRVSEFDAGDEVELTIERDGEERVVQTLIQPIDQSGDRVGIGIYEPLPVQEITADPEVDVALTNVGGPSAGLMFTLE
IYDQLTPGDLANGKRIAGTGTVDEEGNVGPIGGAWQKIVAADEEKAEVFFVPAGSNYEEALESRDRLDSDIEVVPVKTVE
DAIRYLEEMN
>Mature_330_residues
MKSLKIGLGLLVTVLLFLFVPLPYYISSPGAATSIEEFLTVQGGEKEDGELMMVTISQRRATPFWLVESWVTPFTEANLS
SRYLYDGESEADYERRQQLLMDSSQQAAVQYAYQLADQDVTVDFEGIYVSAPIPGSLAANTLKPGDVITAIDGMSFATRV
DFLNRVSEFDAGDEVELTIERDGEERVVQTLIQPIDQSGDRVGIGIYEPLPVQEITADPEVDVALTNVGGPSAGLMFTLE
IYDQLTPGDLANGKRIAGTGTVDEEGNVGPIGGAWQKIVAADEEKAEVFFVPAGSNYEEALESRDRLDSDIEVVPVKTVE
DAIRYLEEMN

Specific function: Unknown

COG id: COG3480

COG function: function code T; Predicted secreted protein containing a PDZ domain

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF00595 PDZ [H]

EC number: NA

Molecular weight: Translated: 36067; Mature: 36067

Theoretical pI: Translated: 3.81; Mature: 3.81

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLKIGLGLLVTVLLFLFVPLPYYISSPGAATSIEEFLTVQGGEKEDGELMMVTISQRR
CCCCHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHEECCCCCCCCCEEEEEECCCC
ATPFWLVESWVTPFTEANLSSRYLYDGESEADYERRQQLLMDSSQQAAVQYAYQLADQDV
CCCEEEHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCE
TVDFEGIYVSAPIPGSLAANTLKPGDVITAIDGMSFATRVDFLNRVSEFDAGDEVELTIE
EEEECCEEEECCCCCCHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEE
RDGEERVVQTLIQPIDQSGDRVGIGIYEPLPVQEITADPEVDVALTNVGGPSAGLMFTLE
CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCEEEEEECCCCCCCEEEEEE
IYDQLTPGDLANGKRIAGTGTVDEEGNVGPIGGAWQKIVAADEEKAEVFFVPAGSNYEEA
HHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHH
LESRDRLDSDIEVVPVKTVEDAIRYLEEMN
HHHHHCCCCCCEEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSLKIGLGLLVTVLLFLFVPLPYYISSPGAATSIEEFLTVQGGEKEDGELMMVTISQRR
CCCCHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHEECCCCCCCCCEEEEEECCCC
ATPFWLVESWVTPFTEANLSSRYLYDGESEADYERRQQLLMDSSQQAAVQYAYQLADQDV
CCCEEEHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCE
TVDFEGIYVSAPIPGSLAANTLKPGDVITAIDGMSFATRVDFLNRVSEFDAGDEVELTIE
EEEECCEEEECCCCCCHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEE
RDGEERVVQTLIQPIDQSGDRVGIGIYEPLPVQEITADPEVDVALTNVGGPSAGLMFTLE
CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCEEEEEECCCCCCCEEEEEE
IYDQLTPGDLANGKRIAGTGTVDEEGNVGPIGGAWQKIVAADEEKAEVFFVPAGSNYEEA
HHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHH
LESRDRLDSDIEVVPVKTVEDAIRYLEEMN
HHHHHCCCCCCEEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]