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The map label for this gene is 229918472

Identifier: 229918472

GI number: 229918472

Start: 2729936

End: 2730445

Strand: Reverse

Name: 229918472

Synonym: EAT1b_2759

Alternate gene names: NA

Gene position: 2730445-2729936 (Counterclockwise)

Preceding gene: 229918477

Following gene: 229918469

Centisome position: 91.02

GC content: 44.9

Gene sequence:

>510_bases
ATGAAGATTGGGGTAGTCTTATTTCCGTCTAAACAAGTGCAAGATTTTGCGAACTCTTATCGAAAACGCTATGACACAAA
ATATGCGTTGATTTCACCTCACGTGACCATTAAAGAGCGGACAGAGGTGTCAGAAGAAGACTTGCCGAAAGTACTCGAGT
ACTTGCAACAAGTTGCGGATTCGACTAAACCGATTCAGTTAAAAGTCGATGGCGTTCGGTCTTTCGCACCGACGAACAAT
GTCTTGTATTTAAAAGTGTTACCGACACGTGATTTGTCGACTCTTCAGCAACGACTGCATGAAGGTGTGCTCAACCAAAC
ACCGAAATATGAATTCTTGCCGCACATCACGATTGGTCAAGATTTGACCGATGCCGAGCTGTTCGACGTCCTCGAACGTA
TGCGTATGGAGCAGGTTCATTTCGAAGAGACGATCACTCGTATGGCCGTCATGTATGAACTCGAAAATGAAACATGGAAC
GTCTATGAGACGTTCCGTTTCCGAGGCTAA

Upstream 100 bases:

>100_bases
TTATACTGAAAAATTGAAAAAAGACGAACCCTGCTTTGACTTCCCACATTAAATCGGTCATCATTAACATGTAGGTTAAA
CGATTAAAGGGGGAAGAGGA

Downstream 100 bases:

>100_bases
CCTTATATGCTCCGGTCGACATAGCGACCGGGGTTTTTTTCTTGCTCTTCTTCAAGCCATTCTTCACGTCGAGGTCGGAT
TCGTTGGACACGTTTGATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MKIGVVLFPSKQVQDFANSYRKRYDTKYALISPHVTIKERTEVSEEDLPKVLEYLQQVADSTKPIQLKVDGVRSFAPTNN
VLYLKVLPTRDLSTLQQRLHEGVLNQTPKYEFLPHITIGQDLTDAELFDVLERMRMEQVHFEETITRMAVMYELENETWN
VYETFRFRG

Sequences:

>Translated_169_residues
MKIGVVLFPSKQVQDFANSYRKRYDTKYALISPHVTIKERTEVSEEDLPKVLEYLQQVADSTKPIQLKVDGVRSFAPTNN
VLYLKVLPTRDLSTLQQRLHEGVLNQTPKYEFLPHITIGQDLTDAELFDVLERMRMEQVHFEETITRMAVMYELENETWN
VYETFRFRG
>Mature_169_residues
MKIGVVLFPSKQVQDFANSYRKRYDTKYALISPHVTIKERTEVSEEDLPKVLEYLQQVADSTKPIQLKVDGVRSFAPTNN
VLYLKVLPTRDLSTLQQRLHEGVLNQTPKYEFLPHITIGQDLTDAELFDVLERMRMEQVHFEETITRMAVMYELENETWN
VYETFRFRG

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 19888; Mature: 19888

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGVVLFPSKQVQDFANSYRKRYDTKYALISPHVTIKERTEVSEEDLPKVLEYLQQVAD
CCEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEHHHCCCCCCHHHHHHHHHHHHHC
STKPIQLKVDGVRSFAPTNNVLYLKVLPTRDLSTLQQRLHEGVLNQTPKYEFLPHITIGQ
CCCCEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCC
DLTDAELFDVLERMRMEQVHFEETITRMAVMYELENETWNVYETFRFRG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
>Mature Secondary Structure
MKIGVVLFPSKQVQDFANSYRKRYDTKYALISPHVTIKERTEVSEEDLPKVLEYLQQVAD
CCEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEHHHCCCCCCHHHHHHHHHHHHHC
STKPIQLKVDGVRSFAPTNNVLYLKVLPTRDLSTLQQRLHEGVLNQTPKYEFLPHITIGQ
CCCCEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCC
DLTDAELFDVLERMRMEQVHFEETITRMAVMYELENETWNVYETFRFRG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA