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The map label for this gene is dppB [H]

Identifier: 229918451

GI number: 229918451

Start: 2710539

End: 2711465

Strand: Direct

Name: dppB [H]

Synonym: EAT1b_2738

Alternate gene names: 229918451

Gene position: 2710539-2711465 (Clockwise)

Preceding gene: 229918450

Following gene: 229918452

Centisome position: 90.35

GC content: 47.9

Gene sequence:

>927_bases
ATGGGACGTTATATCCTACAACGGCTGACTTACGGCCTCATCACGTTCTTCTTGATTGCCACGTTCACGTTCTTCCTGAT
GGACCTGCTCCCAGGTTCGCCGTATCAGAACCAGGAAAAACTGACAGAATCACAAATTCAATTGTTGAATGACCGCTACG
GACTCAATGATCCGCTTCCGGTCCGCTATGCTACGTACATCGGAAACATGTTGCAAGGTGATCTTGGCGTATCATTCCGT
ACAGCCAACCGTCCAGTAACTGAGTTGATTATGGAACGTATCGGTCCTTCGGCACAACTAGGGCTCCAAGCACTGGTTCT
CGGAACTTTTCTAGGTGTATTGTTAGGTGTTGTCGCGGCGATTCGTCACAATACGGTCATTGACTATGGTTCAATGTTCG
TATCGGTAATCGGGATTTCCGTCCCATCGTTCGTTTTTGCAGCCCTCCTTCAGTACTATGTTGGAGTTAAATTACAGTTA
CTCCCGGTCGCATTCTGGGAAACGCCAGCTCATACGATTTTACCAACCATCTCACTATCGCTAGGGGTAACGGCAGCCAT
TGCCCGTTTCGTCCGAACGGAGATGCTTGAAGTCACCGGACAAGATTATGTCACGCTCGCAAAAGCCAAAGGGTTGACGG
GTAACGCGATTGTATGGAAACACATGGTCCGTAACGCCATGATTCCTGCCATCACGATTCTCGGACCGATGACAGCAGGA
CTCTTAACGGGTACGTTCGTCATCGAAAAAATCTTTGCGGTACCTGGTCTTGGTGAGTTGTTCGTTACGTCGATTACGTT
GAACGACTATTCTGTCATCATGGGAACGACATTGTTCTTCTCAGGCTTATTCATTATTATCATTTTGCTTGTCGACTTGC
TCTATGGGGTTGTGGATCCACGTATTCGTCTTGGGGGGAATAACTGA

Upstream 100 bases:

>100_bases
TCCTTTCATTTTGTGAATTTGAAAAATGGGTCATATGTCATAGTAAAGCTGTTGGTGCAAGTAGTAGAAAGAATCAGAAA
AAAACAGGGGGTTTTTATTC

Downstream 100 bases:

>100_bases
TGATTGAAAACAAAAAGAATTACGAACAGTTCGACCAAGACATGTTCACACCAGTTGAAATGAATGAACAGCTTGGCGAG
CGAATCGCTGGGAAAAGTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MGRYILQRLTYGLITFFLIATFTFFLMDLLPGSPYQNQEKLTESQIQLLNDRYGLNDPLPVRYATYIGNMLQGDLGVSFR
TANRPVTELIMERIGPSAQLGLQALVLGTFLGVLLGVVAAIRHNTVIDYGSMFVSVIGISVPSFVFAALLQYYVGVKLQL
LPVAFWETPAHTILPTISLSLGVTAAIARFVRTEMLEVTGQDYVTLAKAKGLTGNAIVWKHMVRNAMIPAITILGPMTAG
LLTGTFVIEKIFAVPGLGELFVTSITLNDYSVIMGTTLFFSGLFIIIILLVDLLYGVVDPRIRLGGNN

Sequences:

>Translated_308_residues
MGRYILQRLTYGLITFFLIATFTFFLMDLLPGSPYQNQEKLTESQIQLLNDRYGLNDPLPVRYATYIGNMLQGDLGVSFR
TANRPVTELIMERIGPSAQLGLQALVLGTFLGVLLGVVAAIRHNTVIDYGSMFVSVIGISVPSFVFAALLQYYVGVKLQL
LPVAFWETPAHTILPTISLSLGVTAAIARFVRTEMLEVTGQDYVTLAKAKGLTGNAIVWKHMVRNAMIPAITILGPMTAG
LLTGTFVIEKIFAVPGLGELFVTSITLNDYSVIMGTTLFFSGLFIIIILLVDLLYGVVDPRIRLGGNN
>Mature_307_residues
GRYILQRLTYGLITFFLIATFTFFLMDLLPGSPYQNQEKLTESQIQLLNDRYGLNDPLPVRYATYIGNMLQGDLGVSFRT
ANRPVTELIMERIGPSAQLGLQALVLGTFLGVLLGVVAAIRHNTVIDYGSMFVSVIGISVPSFVFAALLQYYVGVKLQLL
PVAFWETPAHTILPTISLSLGVTAAIARFVRTEMLEVTGQDYVTLAKAKGLTGNAIVWKHMVRNAMIPAITILGPMTAGL
LTGTFVIEKIFAVPGLGELFVTSITLNDYSVIMGTTLFFSGLFIIIILLVDLLYGVVDPRIRLGGNN

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=305, Percent_Identity=37.3770491803279, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1787053, Length=305, Percent_Identity=37.3770491803279, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=34.3195266272189, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1789888, Length=309, Percent_Identity=36.8932038834951, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787761, Length=337, Percent_Identity=31.4540059347181, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788504, Length=367, Percent_Identity=27.2479564032698, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1787550, Length=269, Percent_Identity=26.3940520446097, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33687; Mature: 33556

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRYILQRLTYGLITFFLIATFTFFLMDLLPGSPYQNQEKLTESQIQLLNDRYGLNDPLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
VRYATYIGNMLQGDLGVSFRTANRPVTELIMERIGPSAQLGLQALVLGTFLGVLLGVVAA
HHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
IRHNTVIDYGSMFVSVIGISVPSFVFAALLQYYVGVKLQLLPVAFWETPAHTILPTISLS
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHCCCCHHHHHHHHHH
LGVTAAIARFVRTEMLEVTGQDYVTLAKAKGLTGNAIVWKHMVRNAMIPAITILGPMTAG
HHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLTGTFVIEKIFAVPGLGELFVTSITLNDYSVIMGTTLFFSGLFIIIILLVDLLYGVVDP
HHHHHHHHHHHHHCCCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIRLGGNN
CEEECCCC
>Mature Secondary Structure 
GRYILQRLTYGLITFFLIATFTFFLMDLLPGSPYQNQEKLTESQIQLLNDRYGLNDPLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
VRYATYIGNMLQGDLGVSFRTANRPVTELIMERIGPSAQLGLQALVLGTFLGVLLGVVAA
HHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
IRHNTVIDYGSMFVSVIGISVPSFVFAALLQYYVGVKLQLLPVAFWETPAHTILPTISLS
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHCCCCHHHHHHHHHH
LGVTAAIARFVRTEMLEVTGQDYVTLAKAKGLTGNAIVWKHMVRNAMIPAITILGPMTAG
HHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLTGTFVIEKIFAVPGLGELFVTSITLNDYSVIMGTTLFFSGLFIIIILLVDLLYGVVDP
HHHHHHHHHHHHHCCCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RIRLGGNN
CEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]