Click here to switch to the map view.

The map label for this gene is oppC [H]

Identifier: 229918452

GI number: 229918452

Start: 2711465

End: 2712490

Strand: Direct

Name: oppC [H]

Synonym: EAT1b_2739

Alternate gene names: 229918452

Gene position: 2711465-2712490 (Clockwise)

Preceding gene: 229918451

Following gene: 229918453

Centisome position: 90.39

GC content: 45.22

Gene sequence:

>1026_bases
ATGATTGAAAACAAAAAGAATTACGAACAGTTCGACCAAGACATGTTCACACCAGTTGAAATGAATGAACAGCTTGGCGA
GCGAATCGCTGGGAAAAGTTTAAACTTCTGGCAAGATGCATGGATGCGTTTAAAGAAAAACAAAGCAGCCATCATCTCGC
TGTCTATCATTTTAATTCTTGTCGCTCTCGCTTTATTTGGCCCGATGCTCTCAAGCCGAGATGCATATGAACAAAACATC
TCGCAAGCGAAGCTTCCACCTAAAGTCACAGGACTTGAATGGGCTGGATTTGATGGATTGGCAACACTTGGCGGTCGTGA
AATCGACTTCTATGAGCAGAAGAATGTAGAAGAAAACTTCTGGTTCGGTACAGATTATCTCGGTCGTGATCTTTGGTCAC
GTATTTGGGAAGGGACACGTATTTCTCTCTTCATCGGGTTCGTCGCTGCCATCATCGATACAATTATTGGTGTCGCATAC
GGTGGAATCTCGGCTTACTTCGGTGGTCGTACCGATAACATCATGCAACGTATTGTTGAAATCTTGACAGGTGTACCAAA
CTTGATTTTGATCATCCTGTTCATCTTGATCTTTGACCCGGGTGTCTTCACCATCATCCTTGCCATGGCCATCACCGGTT
GGATCGGGATGAGTCGACTCGTTCGTGGTCAGATTCTCAAGCTTAAAAACCAAGAGTTCGTCTTGGCAGCTCGCACATTG
GGTGCATCTAGTACGCGTTTGATTTTCAAACACTTGATTCCAAACACATTAGGCGCGATTATCATCACGCTCATGTTCAC
GATTCCATCTGCCATCTTCTTCGAGGCATTCCTCAGCTTTATCGGGATCGGGCTTCAACCACCACAGGCATCACTTGGTA
CGTTGATCAACGATGGATACAAAGAACTACGGACTTTCCCGTTCCTTCTTATTATCCCGTCTGTCATCATCGTCTTGCTC
ATGGTCAGCTTCAACTTGCTTGCTGACGGTTTGCGTGATGCGTTCGATCCGAAAATGCGTAAATAA

Upstream 100 bases:

>100_bases
CGACATTGTTCTTCTCAGGCTTATTCATTATTATCATTTTGCTTGTCGACTTGCTCTATGGGGTTGTGGATCCACGTATT
CGTCTTGGGGGGAATAACTG

Downstream 100 bases:

>100_bases
AAAAGAAAGAGGGGGACTCGTGCATGGAAACGATTTTATCAGTCCGAGACTTAGAGGTCTCGTTCCACACATATGCAGGA
ACAGTTCAAGCTGTTCGTGG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KC [H]

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MIENKKNYEQFDQDMFTPVEMNEQLGERIAGKSLNFWQDAWMRLKKNKAAIISLSIILILVALALFGPMLSSRDAYEQNI
SQAKLPPKVTGLEWAGFDGLATLGGREIDFYEQKNVEENFWFGTDYLGRDLWSRIWEGTRISLFIGFVAAIIDTIIGVAY
GGISAYFGGRTDNIMQRIVEILTGVPNLILIILFILIFDPGVFTIILAMAITGWIGMSRLVRGQILKLKNQEFVLAARTL
GASSTRLIFKHLIPNTLGAIIITLMFTIPSAIFFEAFLSFIGIGLQPPQASLGTLINDGYKELRTFPFLLIIPSVIIVLL
MVSFNLLADGLRDAFDPKMRK

Sequences:

>Translated_341_residues
MIENKKNYEQFDQDMFTPVEMNEQLGERIAGKSLNFWQDAWMRLKKNKAAIISLSIILILVALALFGPMLSSRDAYEQNI
SQAKLPPKVTGLEWAGFDGLATLGGREIDFYEQKNVEENFWFGTDYLGRDLWSRIWEGTRISLFIGFVAAIIDTIIGVAY
GGISAYFGGRTDNIMQRIVEILTGVPNLILIILFILIFDPGVFTIILAMAITGWIGMSRLVRGQILKLKNQEFVLAARTL
GASSTRLIFKHLIPNTLGAIIITLMFTIPSAIFFEAFLSFIGIGLQPPQASLGTLINDGYKELRTFPFLLIIPSVIIVLL
MVSFNLLADGLRDAFDPKMRK
>Mature_341_residues
MIENKKNYEQFDQDMFTPVEMNEQLGERIAGKSLNFWQDAWMRLKKNKAAIISLSIILILVALALFGPMLSSRDAYEQNI
SQAKLPPKVTGLEWAGFDGLATLGGREIDFYEQKNVEENFWFGTDYLGRDLWSRIWEGTRISLFIGFVAAIIDTIIGVAY
GGISAYFGGRTDNIMQRIVEILTGVPNLILIILFILIFDPGVFTIILAMAITGWIGMSRLVRGQILKLKNQEFVLAARTL
GASSTRLIFKHLIPNTLGAIIITLMFTIPSAIFFEAFLSFIGIGLQPPQASLGTLINDGYKELRTFPFLLIIPSVIIVLL
MVSFNLLADGLRDAFDPKMRK

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane. Also required for sporulation and competence [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=341, Percent_Identity=36.0703812316716, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1787054, Length=308, Percent_Identity=30.1948051948052, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787760, Length=298, Percent_Identity=33.2214765100671, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1788505, Length=331, Percent_Identity=30.2114803625378, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1789964, Length=304, Percent_Identity=31.9078947368421, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1789889, Length=223, Percent_Identity=30.9417040358744, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787549, Length=297, Percent_Identity=24.2424242424242, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38199; Mature: 38199

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENKKNYEQFDQDMFTPVEMNEQLGERIAGKSLNFWQDAWMRLKKNKAAIISLSIILIL
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
VALALFGPMLSSRDAYEQNISQAKLPPKVTGLEWAGFDGLATLGGREIDFYEQKNVEENF
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCCCCC
WFGTDYLGRDLWSRIWEGTRISLFIGFVAAIIDTIIGVAYGGISAYFGGRTDNIMQRIVE
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ILTGVPNLILIILFILIFDPGVFTIILAMAITGWIGMSRLVRGQILKLKNQEFVLAARTL
HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHC
GASSTRLIFKHLIPNTLGAIIITLMFTIPSAIFFEAFLSFIGIGLQPPQASLGTLINDGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KELRTFPFLLIIPSVIIVLLMVSFNLLADGLRDAFDPKMRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIENKKNYEQFDQDMFTPVEMNEQLGERIAGKSLNFWQDAWMRLKKNKAAIISLSIILIL
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
VALALFGPMLSSRDAYEQNISQAKLPPKVTGLEWAGFDGLATLGGREIDFYEQKNVEENF
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCCCCC
WFGTDYLGRDLWSRIWEGTRISLFIGFVAAIIDTIIGVAYGGISAYFGGRTDNIMQRIVE
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ILTGVPNLILIILFILIFDPGVFTIILAMAITGWIGMSRLVRGQILKLKNQEFVLAARTL
HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHC
GASSTRLIFKHLIPNTLGAIIITLMFTIPSAIFFEAFLSFIGIGLQPPQASLGTLINDGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KELRTFPFLLIIPSVIIVLLMVSFNLLADGLRDAFDPKMRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]