| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is recJ [H]
Identifier: 229918414
GI number: 229918414
Start: 2668547
End: 2670841
Strand: Direct
Name: recJ [H]
Synonym: EAT1b_2700
Alternate gene names: 229918414
Gene position: 2668547-2670841 (Clockwise)
Preceding gene: 229918412
Following gene: 229918415
Centisome position: 88.95
GC content: 50.5
Gene sequence:
>2295_bases ATGTACCATTCGAAGAAACAGTGGCTCTATCCGGAAACGAATCCGGACGACGTCACGCGTTTACAAAACGAATTAAATAT ATCAGCACAACTGGCGACGTTGCTCGTTCAGCGTGGTCATCAGGACGTAGAAGCGGCCAAGGCATTCTTATATGCCGAGG AAGAACTCATCTTTCATGACCCGTACTTGTTTGAACAGATGGAGAAAGTCGTCACCCGCATCAAACAGGCAGCAGACGAT GGGGAGATGGTGCTCATCTATGGTGACTACGATGTCGATGGAGTCAGCGCCTCATCCGTCATGTGGCACGCGTTGACCGA AATCGGTGTCATGGCCGAGTGTTATATCCCGAACCGTTTCACGGAAGGATATGGACCGAACAAAGAAGCATTCCAATGGG CGGCGAACGAGGGATTCACCTTGGTCATCACGGTGGATTGCGGAATTTCAGGGATTGAAGAAGCGACACTCTTAAAAGAC CTTGGTGTCGATTTGATCATCACGGACCACCACGAGCCGAAAGAGACATTGCCGGACGCCTATGCGATCATTCATCCGCA TATCGACCCGGGATATCCATACGATAAACTCGCCGGAGCGGGGGTCGCCCTCAAAGTGGCACACGCCGTTTTAGGAAGAA TGCCGGAAGAACTCCTTGATTTGGCCGTCCTCGGAACGATTGCCGACCTCGTCCCACTCGACGGAGAGAATCGGTTGCTC GCGAAGAAGGGAATCGCCGCACTCGAGGCTTCAAAACGTCCAGGTATTCTAGCATTACGTGAAGTATGTGGTCTCGGTGA CAGCGTATTGAACGAAGAGTCGGTCGGTTTCGCGTTCGGTCCACGCATCAATGCCGCAGGTCGACTCGATTCAGCGATGC CGGCATTACAAATGCTCCTAGCTGAACATGTCGAGGAAGCGCTCGAGCTCGCAAAACAGCTCGATAAGCAAAACAAAGAA CGTCAAGACATCGTCAAGACGATCGCTGCTGAAGCGAAAGAACTCGTCGAAGCATCGATGACCGAGGACCGTGTACTCGT CGTGGCAAGTGAGAAGTGGAATCCTGGAGTTGTCGGGATTGTCGCATCTCGTCTCGTCGAGGCGTACTATCGTCCAGTCA TCCTCCTTTGCCACGACCCTGAGACGGGCAAGGCGAAAGGGTCGGGTCGCTCGATTGATGGGTTTGACTTATTTAAAGAG CTTTCGAAGAATGAAGATATTTTGCCACACTTTGGCGGACATCCAGCTGCGGCCGGGATGACCCTTCAGTCGGAACATGT CGCCGAACTACGAGAGCGACTGAACCGTCAGGCGGAGTCCATCCCGGATGACGTATTTGTACCACGAGTCAACGTCGACT TGAAACTCTCCGTTAACGACGTTTCGCTCGATTTGATCTCAGAGATTGGAAAGCTCGCGCCATTTGGTATGGGGAATCCA TCCCCTCGTGTCGTCGTCGCAGATGCGAAACTGCGTGATATTCGCCAAATCGGACGGGATGCCACGCATTTGAAAGTACA ACTCGCCGGAGACAAGCGTGAGCTCGATGGCATCGGATTTGGATTCGGGCACGTCGTTTCAGAGATTTCAAAGATGGCTC ATATCTCGGTGATGGGAAGTCTTCAAGTCAACGAATGGAACGGAATGCGTAAACCGCAGCTCATGATTCAAGATTTACGG GTCGATGATTTCCAAGTGTTTGACTATCGAGGGAAGAAAAAATCGATGCAAGAGTTGAAAGATTTGCCGAAAGAACAGAC GTCATTTTTATCTTTCCAAGGGACGAACGAAGATTTTCCACTCCATGAAGGAGATGAACCGCTCAACCGTTTCGTCGTCC TGCTCGATCTTCCTGATGATGAAGAGGTACTCGCAGAGAAACTTCATGAAGGGGTCGAACGCATTTATTGTGCCTTCGGT CAAGGAGACTCGTTCTTTGAACGTCTTCCATCCCGTGAGGATTTCCGAACGTATTATGTCCATATGGCGACATGCGAACG GAAAAATCTTCGTGAAAACCTGATTCGTCTGTCAAAAGAGCGAAAATGGTCAAAAAATACGATTCAATTTATGCATCAAG TATTCTCTGAACTCGAATTTCTTGTTACAATGGAAGACGGACTGCCTGGAGTCAATCCAGAAGCACCGAAACGCGATTTG ACCGAGGCGCCGTGCTATCAACGCCGGATTGGGCGCCAACAACTCGAAGAGCGTTTCGTATACGCGTCATTGGCGGAGCT CAAAGAGCGGTTACAATCGTTGCGATCGAACAAGATGCAGGAGGCATACACATAA
Upstream 100 bases:
>100_bases ACAAGTGGGTCTCCCTTCAATCGGGAGACCTTTTCAAATGTCAAGACGGCACATCTTTCACGCGGTCTGCTATAATCTAC AATTGATTGGAGTGAAGGAC
Downstream 100 bases:
>100_bases AATGGATTTCAAACAGCATATTAAAGAAGTAGCAGATTACCCGAAGGAAGGAATCAGCTTCAAAGACATCACGTCACTCA TGCAAAATGGCGAAGTCTAC
Product: single-stranded-DNA-specific exonuclease RecJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MYHSKKQWLYPETNPDDVTRLQNELNISAQLATLLVQRGHQDVEAAKAFLYAEEELIFHDPYLFEQMEKVVTRIKQAADD GEMVLIYGDYDVDGVSASSVMWHALTEIGVMAECYIPNRFTEGYGPNKEAFQWAANEGFTLVITVDCGISGIEEATLLKD LGVDLIITDHHEPKETLPDAYAIIHPHIDPGYPYDKLAGAGVALKVAHAVLGRMPEELLDLAVLGTIADLVPLDGENRLL AKKGIAALEASKRPGILALREVCGLGDSVLNEESVGFAFGPRINAAGRLDSAMPALQMLLAEHVEEALELAKQLDKQNKE RQDIVKTIAAEAKELVEASMTEDRVLVVASEKWNPGVVGIVASRLVEAYYRPVILLCHDPETGKAKGSGRSIDGFDLFKE LSKNEDILPHFGGHPAAAGMTLQSEHVAELRERLNRQAESIPDDVFVPRVNVDLKLSVNDVSLDLISEIGKLAPFGMGNP SPRVVVADAKLRDIRQIGRDATHLKVQLAGDKRELDGIGFGFGHVVSEISKMAHISVMGSLQVNEWNGMRKPQLMIQDLR VDDFQVFDYRGKKKSMQELKDLPKEQTSFLSFQGTNEDFPLHEGDEPLNRFVVLLDLPDDEEVLAEKLHEGVERIYCAFG QGDSFFERLPSREDFRTYYVHMATCERKNLRENLIRLSKERKWSKNTIQFMHQVFSELEFLVTMEDGLPGVNPEAPKRDL TEAPCYQRRIGRQQLEERFVYASLAELKERLQSLRSNKMQEAYT
Sequences:
>Translated_764_residues MYHSKKQWLYPETNPDDVTRLQNELNISAQLATLLVQRGHQDVEAAKAFLYAEEELIFHDPYLFEQMEKVVTRIKQAADD GEMVLIYGDYDVDGVSASSVMWHALTEIGVMAECYIPNRFTEGYGPNKEAFQWAANEGFTLVITVDCGISGIEEATLLKD LGVDLIITDHHEPKETLPDAYAIIHPHIDPGYPYDKLAGAGVALKVAHAVLGRMPEELLDLAVLGTIADLVPLDGENRLL AKKGIAALEASKRPGILALREVCGLGDSVLNEESVGFAFGPRINAAGRLDSAMPALQMLLAEHVEEALELAKQLDKQNKE RQDIVKTIAAEAKELVEASMTEDRVLVVASEKWNPGVVGIVASRLVEAYYRPVILLCHDPETGKAKGSGRSIDGFDLFKE LSKNEDILPHFGGHPAAAGMTLQSEHVAELRERLNRQAESIPDDVFVPRVNVDLKLSVNDVSLDLISEIGKLAPFGMGNP SPRVVVADAKLRDIRQIGRDATHLKVQLAGDKRELDGIGFGFGHVVSEISKMAHISVMGSLQVNEWNGMRKPQLMIQDLR VDDFQVFDYRGKKKSMQELKDLPKEQTSFLSFQGTNEDFPLHEGDEPLNRFVVLLDLPDDEEVLAEKLHEGVERIYCAFG QGDSFFERLPSREDFRTYYVHMATCERKNLRENLIRLSKERKWSKNTIQFMHQVFSELEFLVTMEDGLPGVNPEAPKRDL TEAPCYQRRIGRQQLEERFVYASLAELKERLQSLRSNKMQEAYT >Mature_764_residues MYHSKKQWLYPETNPDDVTRLQNELNISAQLATLLVQRGHQDVEAAKAFLYAEEELIFHDPYLFEQMEKVVTRIKQAADD GEMVLIYGDYDVDGVSASSVMWHALTEIGVMAECYIPNRFTEGYGPNKEAFQWAANEGFTLVITVDCGISGIEEATLLKD LGVDLIITDHHEPKETLPDAYAIIHPHIDPGYPYDKLAGAGVALKVAHAVLGRMPEELLDLAVLGTIADLVPLDGENRLL AKKGIAALEASKRPGILALREVCGLGDSVLNEESVGFAFGPRINAAGRLDSAMPALQMLLAEHVEEALELAKQLDKQNKE RQDIVKTIAAEAKELVEASMTEDRVLVVASEKWNPGVVGIVASRLVEAYYRPVILLCHDPETGKAKGSGRSIDGFDLFKE LSKNEDILPHFGGHPAAAGMTLQSEHVAELRERLNRQAESIPDDVFVPRVNVDLKLSVNDVSLDLISEIGKLAPFGMGNP SPRVVVADAKLRDIRQIGRDATHLKVQLAGDKRELDGIGFGFGHVVSEISKMAHISVMGSLQVNEWNGMRKPQLMIQDLR VDDFQVFDYRGKKKSMQELKDLPKEQTSFLSFQGTNEDFPLHEGDEPLNRFVVLLDLPDDEEVLAEKLHEGVERIYCAFG QGDSFFERLPSREDFRTYYVHMATCERKNLRENLIRLSKERKWSKNTIQFMHQVFSELEFLVTMEDGLPGVNPEAPKRDL TEAPCYQRRIGRQQLEERFVYASLAELKERLQSLRSNKMQEAYT
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=525, Percent_Identity=34.2857142857143, Blast_Score=256, Evalue=5e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 85617; Mature: 85617
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYHSKKQWLYPETNPDDVTRLQNELNISAQLATLLVQRGHQDVEAAKAFLYAEEELIFHD CCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHEECC PYLFEQMEKVVTRIKQAADDGEMVLIYGDYDVDGVSASSVMWHALTEIGVMAECYIPNRF CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECCCCC TEGYGPNKEAFQWAANEGFTLVITVDCGISGIEEATLLKDLGVDLIITDHHEPKETLPDA CCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCHHHCCCC YAIIHPHIDPGYPYDKLAGAGVALKVAHAVLGRMPEELLDLAVLGTIADLVPLDGENRLL EEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCH AKKGIAALEASKRPGILALREVCGLGDSVLNEESVGFAFGPRINAAGRLDSAMPALQMLL HHHCCHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH AEHVEEALELAKQLDKQNKERQDIVKTIAAEAKELVEASMTEDRVLVVASEKWNPGVVGI HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH VASRLVEAYYRPVILLCHDPETGKAKGSGRSIDGFDLFKELSKNEDILPHFGGHPAAAGM HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC TLQSEHVAELRERLNRQAESIPDDVFVPRVNVDLKLSVNDVSLDLISEIGKLAPFGMGNP EECHHHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECHHHHHHHHHHHHHCCCCCCCC SPRVVVADAKLRDIRQIGRDATHLKVQLAGDKRELDGIGFGFGHVVSEISKMAHISVMGS CCEEEEECCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEC LQVNEWNGMRKPQLMIQDLRVDDFQVFDYRGKKKSMQELKDLPKEQTSFLSFQGTNEDFP EEEECCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCHHHHHEEEECCCCCCCC LHEGDEPLNRFVVLLDLPDDEEVLAEKLHEGVERIYCAFGQGDSFFERLPSREDFRTYYV CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEE HMATCERKNLRENLIRLSKERKWSKNTIQFMHQVFSELEFLVTMEDGLPGVNPEAPKRDL EEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCC TEAPCYQRRIGRQQLEERFVYASLAELKERLQSLRSNKMQEAYT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MYHSKKQWLYPETNPDDVTRLQNELNISAQLATLLVQRGHQDVEAAKAFLYAEEELIFHD CCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHEECC PYLFEQMEKVVTRIKQAADDGEMVLIYGDYDVDGVSASSVMWHALTEIGVMAECYIPNRF CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECCCCC TEGYGPNKEAFQWAANEGFTLVITVDCGISGIEEATLLKDLGVDLIITDHHEPKETLPDA CCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCHHHCCCC YAIIHPHIDPGYPYDKLAGAGVALKVAHAVLGRMPEELLDLAVLGTIADLVPLDGENRLL EEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCH AKKGIAALEASKRPGILALREVCGLGDSVLNEESVGFAFGPRINAAGRLDSAMPALQMLL HHHCCHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH AEHVEEALELAKQLDKQNKERQDIVKTIAAEAKELVEASMTEDRVLVVASEKWNPGVVGI HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH VASRLVEAYYRPVILLCHDPETGKAKGSGRSIDGFDLFKELSKNEDILPHFGGHPAAAGM HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC TLQSEHVAELRERLNRQAESIPDDVFVPRVNVDLKLSVNDVSLDLISEIGKLAPFGMGNP EECHHHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECHHHHHHHHHHHHHCCCCCCCC SPRVVVADAKLRDIRQIGRDATHLKVQLAGDKRELDGIGFGFGHVVSEISKMAHISVMGS CCEEEEECCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEC LQVNEWNGMRKPQLMIQDLRVDDFQVFDYRGKKKSMQELKDLPKEQTSFLSFQGTNEDFP EEEECCCCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCHHHHHEEEECCCCCCCC LHEGDEPLNRFVVLLDLPDDEEVLAEKLHEGVERIYCAFGQGDSFFERLPSREDFRTYYV CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEE HMATCERKNLRENLIRLSKERKWSKNTIQFMHQVFSELEFLVTMEDGLPGVNPEAPKRDL EEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCC TEAPCYQRRIGRQQLEERFVYASLAELKERLQSLRSNKMQEAYT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]