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The map label for this gene is polX [H]

Identifier: 229918289

GI number: 229918289

Start: 2530728

End: 2532422

Strand: Direct

Name: polX [H]

Synonym: EAT1b_2572

Alternate gene names: 229918289

Gene position: 2530728-2532422 (Clockwise)

Preceding gene: 229918288

Following gene: 229918290

Centisome position: 84.36

GC content: 54.1

Gene sequence:

>1695_bases
ATGAATAAAGTAGAAGCGATGATGTTGCTCGAAAAAATCGCGCAATATATGGAGATCAAAGGGGAGAACCCGTTTAAAAT
CAATGCGTTCCGCAAGGCGGCGACAGCGCTCGAGAACACGGACCTTGAACTCGAGGACATCGACGACTTGACGTCCATCT
CAGGAATCGGGAAAGGGACGGCTGCAGTCCTTGAAGAGTATCGAGACACAGGACGCAGTGAAGTACTTGAAGCACTGCAA
GAAGAGATTCCGTTCGGTTTGATGAAGCTCTTGAAAATTCAAGGGCTCGGCGGGAAGAAACTTGCTAAACTCCGTGAAAT
CGGTGTCGTCGACTTGGAGTCGCTCATCCGTGTACTCGAAGACGGGACGGCTGCATCACTACCCGGTTTCGGGGCGAAGA
GTGTTGAGAAATTACTCGCCGCCGCGAAGAACCTCGAATCACGTCCAGAACGATTGGCTTATGCAGTCATGCGACCAATC
GTTGAAGAAATCAATGAGGTGTTAGAGAAGGAGACGCTCGTCTTGCGTCATTCGGTCGGAGGAAGCTTCCGCCGTGCCGA
AGAGACGTGTAAAGACCTTGACTTCATCATCGCGACCGAGGAGCCGATTGAGCTACGTGAGAAGCTGCTCGCTTTGCCGT
TCATCAACGAGGTGATTGCGGCAGGTGAGACGAAAGTCTCGCTCGTCCTCGAACGTGAGGAGATGGTATCGGTCGACTTC
CGTATGGTCGAGCCAGGCGCGTTCGCTGCCACGCTTCACCACTTCACGGGCTCGAAAGACCACAACGTCCGCATGCGCCA
ACTCGCGAAGGCAAAAGGGGAATCCATTTCCGAATATGGGGTCGAGACGGCAGATGGGTTGTGGCAACCGGAAACCGAAG
AAGAGCTGTTCGAACGGTACGGTCTCCCATTCATCCCGCCTGAACTTCGGGAGGGACATGCCGAGTTCGAACACGACTTA
TCAAAGCTCGTCACGCTCGATGATATCAAGGCTGACGCGCACATGCACACGGTCTGGTCGGACGGGAAGTTGACCGTCGA
CGAGATCGTCGTAGCGATGAAAGGTCGCGGCTATGAATGGATGGCCATCACCGACCACGGGAAGTATTTGACGTTCGTCA
ATGGCTTGACCGAGGAACGGCTCGAGGCACAAGGGGAAGAAATTCGCGAAGCCGCGAAGACACATAACATGAACGTGTTA
CGAGGCGTCGAGATGGATATTCGTCCTGACGGGACACTCGACTATGAACCCGAGTTTCTAGAGACGCTCGACTACGTCGT
CGCTTCCATCCATTCGAAGATGGACCAATCGGTCGACGAAATCATGGCTCGTCTGGAGAACGCCTGCCGTTCTCCGTACG
TCAACGTGATCGCCCATCCAACAGGTCGACTCATCGGTCGTCGGGACGGTTATCCGATCGACGAGGACAAGCTGATCGCA
CTCGCTAAAGAGACAGGGACAGCGCTCGAGTTGAACGCCAACCCGAACCGCCTCGACCTGACAGCTTCTACGCTGAAGAA
AGCGAAAGCAGCGGGCGTCAAAGTGATGATCAACACGGACACGCATCACCCAGATATGATGGAAGACATGGCCCTCGGTG
TGTTGCACGCACGGAAAGCCTATCTCGAACCATCAGATATTATCAACTGCTTCACGTTTGAAGACGCCAAGGCGTTCTTT
GCGGCGAAGCGATAG

Upstream 100 bases:

>100_bases
CTATCGGATTGGTTTTCAAATAAGATGTTGTGACACGACAGGCCGGAATGCAAGCTAGTGCTTGTGTCTCGGTCTTTTCT
GTGTGAAGAGGGGGAAGCAT

Downstream 100 bases:

>100_bases
AAAGGAACATGCTAGATGGACCACGCGTTACGCGTATTAGAATATGAAAAATTGCGCCAACAGCTTGCCGGTCACGCGGC
GAGCTCGCTCGGAAAAGATT

Product: hypothetical protein

Products: NA

Alternate protein names: DNA polymerase type-X; 3'-5' exodeoxyribonuclease; 3'-5' exonuclease [H]

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MNKVEAMMLLEKIAQYMEIKGENPFKINAFRKAATALENTDLELEDIDDLTSISGIGKGTAAVLEEYRDTGRSEVLEALQ
EEIPFGLMKLLKIQGLGGKKLAKLREIGVVDLESLIRVLEDGTAASLPGFGAKSVEKLLAAAKNLESRPERLAYAVMRPI
VEEINEVLEKETLVLRHSVGGSFRRAEETCKDLDFIIATEEPIELREKLLALPFINEVIAAGETKVSLVLEREEMVSVDF
RMVEPGAFAATLHHFTGSKDHNVRMRQLAKAKGESISEYGVETADGLWQPETEEELFERYGLPFIPPELREGHAEFEHDL
SKLVTLDDIKADAHMHTVWSDGKLTVDEIVVAMKGRGYEWMAITDHGKYLTFVNGLTEERLEAQGEEIREAAKTHNMNVL
RGVEMDIRPDGTLDYEPEFLETLDYVVASIHSKMDQSVDEIMARLENACRSPYVNVIAHPTGRLIGRRDGYPIDEDKLIA
LAKETGTALELNANPNRLDLTASTLKKAKAAGVKVMINTDTHHPDMMEDMALGVLHARKAYLEPSDIINCFTFEDAKAFF
AAKR

Sequences:

>Translated_564_residues
MNKVEAMMLLEKIAQYMEIKGENPFKINAFRKAATALENTDLELEDIDDLTSISGIGKGTAAVLEEYRDTGRSEVLEALQ
EEIPFGLMKLLKIQGLGGKKLAKLREIGVVDLESLIRVLEDGTAASLPGFGAKSVEKLLAAAKNLESRPERLAYAVMRPI
VEEINEVLEKETLVLRHSVGGSFRRAEETCKDLDFIIATEEPIELREKLLALPFINEVIAAGETKVSLVLEREEMVSVDF
RMVEPGAFAATLHHFTGSKDHNVRMRQLAKAKGESISEYGVETADGLWQPETEEELFERYGLPFIPPELREGHAEFEHDL
SKLVTLDDIKADAHMHTVWSDGKLTVDEIVVAMKGRGYEWMAITDHGKYLTFVNGLTEERLEAQGEEIREAAKTHNMNVL
RGVEMDIRPDGTLDYEPEFLETLDYVVASIHSKMDQSVDEIMARLENACRSPYVNVIAHPTGRLIGRRDGYPIDEDKLIA
LAKETGTALELNANPNRLDLTASTLKKAKAAGVKVMINTDTHHPDMMEDMALGVLHARKAYLEPSDIINCFTFEDAKAFF
AAKR
>Mature_564_residues
MNKVEAMMLLEKIAQYMEIKGENPFKINAFRKAATALENTDLELEDIDDLTSISGIGKGTAAVLEEYRDTGRSEVLEALQ
EEIPFGLMKLLKIQGLGGKKLAKLREIGVVDLESLIRVLEDGTAASLPGFGAKSVEKLLAAAKNLESRPERLAYAVMRPI
VEEINEVLEKETLVLRHSVGGSFRRAEETCKDLDFIIATEEPIELREKLLALPFINEVIAAGETKVSLVLEREEMVSVDF
RMVEPGAFAATLHHFTGSKDHNVRMRQLAKAKGESISEYGVETADGLWQPETEEELFERYGLPFIPPELREGHAEFEHDL
SKLVTLDDIKADAHMHTVWSDGKLTVDEIVVAMKGRGYEWMAITDHGKYLTFVNGLTEERLEAQGEEIREAAKTHNMNVL
RGVEMDIRPDGTLDYEPEFLETLDYVVASIHSKMDQSVDEIMARLENACRSPYVNVIAHPTGRLIGRRDGYPIDEDKLIA
LAKETGTALELNANPNRLDLTASTLKKAKAAGVKVMINTDTHHPDMMEDMALGVLHARKAYLEPSDIINCFTFEDAKAFF
AAKR

Specific function: Strictly DNA-template-directed DNA polymerase, preferentially acting on DNA structures containing gaps from one to a few nucleotides and bearing a phosphate group at the 5' end of the downstream DNA. The fact that PolX is able to conduct filling of a sing

COG id: COG1796

COG function: function code L; DNA polymerase IV (family X)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the PHP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002054
- InterPro:   IPR010996
- InterPro:   IPR003583
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195
- InterPro:   IPR022311 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 62953; Mature: 62953

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVEAMMLLEKIAQYMEIKGENPFKINAFRKAATALENTDLELEDIDDLTSISGIGKGT
CCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
AAVLEEYRDTGRSEVLEALQEEIPFGLMKLLKIQGLGGKKLAKLREIGVVDLESLIRVLE
HHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHC
DGTAASLPGFGAKSVEKLLAAAKNLESRPERLAYAVMRPIVEEINEVLEKETLVLRHSVG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GSFRRAEETCKDLDFIIATEEPIELREKLLALPFINEVIAAGETKVSLVLEREEMVSVDF
CCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCE
RMVEPGAFAATLHHFTGSKDHNVRMRQLAKAKGESISEYGVETADGLWQPETEEELFERY
EEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHC
GLPFIPPELREGHAEFEHDLSKLVTLDDIKADAHMHTVWSDGKLTVDEIVVAMKGRGYEW
CCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEHHHHHHHCCCCCEEE
MAITDHGKYLTFVNGLTEERLEAQGEEIREAAKTHNMNVLRGVEMDIRPDGTLDYEPEFL
EEEECCCCEEEHHHCHHHHHHHHCCHHHHHHHHHCCCHHEECCEEECCCCCCCCCCHHHH
ETLDYVVASIHSKMDQSVDEIMARLENACRSPYVNVIAHPTGRLIGRRDGYPIDEDKLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCCCCCEEE
LAKETGTALELNANPNRLDLTASTLKKAKAAGVKVMINTDTHHPDMMEDMALGVLHARKA
EEECCCCEEEECCCCCEEEEEHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
YLEPSDIINCFTFEDAKAFFAAKR
HCCHHHHEEEEEECHHHHHHHCCC
>Mature Secondary Structure
MNKVEAMMLLEKIAQYMEIKGENPFKINAFRKAATALENTDLELEDIDDLTSISGIGKGT
CCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
AAVLEEYRDTGRSEVLEALQEEIPFGLMKLLKIQGLGGKKLAKLREIGVVDLESLIRVLE
HHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHC
DGTAASLPGFGAKSVEKLLAAAKNLESRPERLAYAVMRPIVEEINEVLEKETLVLRHSVG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GSFRRAEETCKDLDFIIATEEPIELREKLLALPFINEVIAAGETKVSLVLEREEMVSVDF
CCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCE
RMVEPGAFAATLHHFTGSKDHNVRMRQLAKAKGESISEYGVETADGLWQPETEEELFERY
EEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHC
GLPFIPPELREGHAEFEHDLSKLVTLDDIKADAHMHTVWSDGKLTVDEIVVAMKGRGYEW
CCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEHHHHHHHCCCCCEEE
MAITDHGKYLTFVNGLTEERLEAQGEEIREAAKTHNMNVLRGVEMDIRPDGTLDYEPEFL
EEEECCCCEEEHHHCHHHHHHHHCCHHHHHHHHHCCCHHEECCEEECCCCCCCCCCHHHH
ETLDYVVASIHSKMDQSVDEIMARLENACRSPYVNVIAHPTGRLIGRRDGYPIDEDKLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCCCCCEEE
LAKETGTALELNANPNRLDLTASTLKKAKAAGVKVMINTDTHHPDMMEDMALGVLHARKA
EEECCCCEEEECCCCCEEEEEHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
YLEPSDIINCFTFEDAKAFFAAKR
HCCHHHHEEEEEECHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]