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The map label for this gene is yshB [H]

Identifier: 229918288

GI number: 229918288

Start: 2530124

End: 2530660

Strand: Direct

Name: yshB [H]

Synonym: EAT1b_2571

Alternate gene names: 229918288

Gene position: 2530124-2530660 (Clockwise)

Preceding gene: 229918287

Following gene: 229918289

Centisome position: 84.34

GC content: 47.67

Gene sequence:

>537_bases
ATGGTTACGCTACTTATACTGTTTTTCTTATTTATCGGAATCGTCAACGGCTTCCGTCGTGGCGCGATTCTACAGCTCGG
CCATTGGGTCGCGCTCATCATCAGTTTTCTCGTCGCCAATACGTACTATAAAGAGTTAGCCGAAGCGTTCAAGCTGTGGA
TCCCGTATTCGTCTCAGCTCGACGGAACGCTCCCGGGTGGCGTGTTGGACCTCAATTCCCTTTCAGGGATTGAGATGACA
TTTTATAACGTCTTTTGGTTCGTCGTCTTGTTCCTCATTACGAAACTCGTCTTGCATCTCATCTTGGCGATGCTCGACTT
CTTGACGGACTTGCCAATTTTGCGCCAATTAAAAGGTGTGATCGGAGCTGTCCTAGGATTCTTCGAGGCATATGTCATCA
CATTCTTCATCCTTTGGGTGATCGCGTTCGTGCCGATGGCGAGCGTTCAAAACGCCGTCGACAAATCGTCGCTGGCGACA
TATATCATTCAAGACACGCCATATCTATCGGATTGGTTTTCAAATAAGATGTTGTGA

Upstream 100 bases:

>100_bases
CCCCTCATCTAGATGCTCGTCAGGCAGCGGTGTTGGCTGCGATTCAAATCGCGAGCGACCACGTCAAAACTAAACGAAAT
ATGGGAGAATAAATCAATCC

Downstream 100 bases:

>100_bases
CACGACAGGCCGGAATGCAAGCTAGTGCTTGTGTCTCGGTCTTTTCTGTGTGAAGAGGGGGAAGCATATGAATAAAGTAG
AAGCGATGATGTTGCTCGAA

Product: Colicin V production protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MVTLLILFFLFIGIVNGFRRGAILQLGHWVALIISFLVANTYYKELAEAFKLWIPYSSQLDGTLPGGVLDLNSLSGIEMT
FYNVFWFVVLFLITKLVLHLILAMLDFLTDLPILRQLKGVIGAVLGFFEAYVITFFILWVIAFVPMASVQNAVDKSSLAT
YIIQDTPYLSDWFSNKML

Sequences:

>Translated_178_residues
MVTLLILFFLFIGIVNGFRRGAILQLGHWVALIISFLVANTYYKELAEAFKLWIPYSSQLDGTLPGGVLDLNSLSGIEMT
FYNVFWFVVLFLITKLVLHLILAMLDFLTDLPILRQLKGVIGAVLGFFEAYVITFFILWVIAFVPMASVQNAVDKSSLAT
YIIQDTPYLSDWFSNKML
>Mature_178_residues
MVTLLILFFLFIGIVNGFRRGAILQLGHWVALIISFLVANTYYKELAEAFKLWIPYSSQLDGTLPGGVLDLNSLSGIEMT
FYNVFWFVVLFLITKLVLHLILAMLDFLTDLPILRQLKGVIGAVLGFFEAYVITFFILWVIAFVPMASVQNAVDKSSLAT
YIIQDTPYLSDWFSNKML

Specific function: Unknown

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003825 [H]

Pfam domain/function: PF02674 Colicin_V [H]

EC number: NA

Molecular weight: Translated: 20173; Mature: 20173

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTLLILFFLFIGIVNGFRRGAILQLGHWVALIISFLVANTYYKELAEAFKLWIPYSSQL
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGTLPGGVLDLNSLSGIEMTFYNVFWFVVLFLITKLVLHLILAMLDFLTDLPILRQLKGV
CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IGAVLGFFEAYVITFFILWVIAFVPMASVQNAVDKSSLATYIIQDTPYLSDWFSNKML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
>Mature Secondary Structure
MVTLLILFFLFIGIVNGFRRGAILQLGHWVALIISFLVANTYYKELAEAFKLWIPYSSQL
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGTLPGGVLDLNSLSGIEMTFYNVFWFVVLFLITKLVLHLILAMLDFLTDLPILRQLKGV
CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
IGAVLGFFEAYVITFFILWVIAFVPMASVQNAVDKSSLATYIIQDTPYLSDWFSNKML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]