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The map label for this gene is ypmQ [H]

Identifier: 229918261

GI number: 229918261

Start: 2505656

End: 2506210

Strand: Direct

Name: ypmQ [H]

Synonym: EAT1b_2544

Alternate gene names: 229918261

Gene position: 2505656-2506210 (Clockwise)

Preceding gene: 229918260

Following gene: 229918262

Centisome position: 83.52

GC content: 47.39

Gene sequence:

>555_bases
TTGACGACGATGCTCATCGTCCTAGCAGGATGCGGGCAAGAGATTGAGGACCCGCTCAACTGGGAAGTCGAAGCGTTCGA
ATATACGAATCAAGATGAAGAAATGGTCAGTCTTGACGATTTAAAAGGGAAAGTTTGGATGGCGGATTTCGTTTTCACAA
GCTGTGAGACAGTCTGTCCACCGATGACATACAATATGACAAAGCTAAATGAAGCGCTTGAAGAAGAGGGCGTCGAAGAC
GTGCAATTCGTTTCCTTCAGCGTCGACCCGACGGTGGACACTCCGGAGAAGATGAAAGAGTTTATGAGTGGCTATGACCT
TGCGAAAGCAGATTGGCAGTTCCTCTCAGGCTACTCGCAAGACGAGATTGAAACGTTTGCCCAACAGAACTTCAAGGCGC
TCGTCCGGAAGCCTGACGAAGGTACACAAGTCGACCACGGCACGTATTTCTATTTGGTCGACCAGGAAGGAAAAATCATC
AAGGCGTATCCTGGTTTCCAAAACGTTCCGACCGAAGACATCATCAACGACATTAAAATCTTGCAAAAATCTTAA

Upstream 100 bases:

>100_bases
TTCCTCGCATTGACAGCTTTCACGCTCATCACGATCCTCATGTGGAACGTCAAAAAGCGATAAGGAGTTGGCATGTGTGA
AGAAATAGTGGATGATTGGT

Downstream 100 bases:

>100_bases
CCGAAGTCCTGCTCCACCAAACACGGGTGGGCAGGTCTTTTTGGTTTAAGAGACCTGATATAATGGAATAACCAGAATGC
TCAATGAAGAGCACGCCATT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MTTMLIVLAGCGQEIEDPLNWEVEAFEYTNQDEEMVSLDDLKGKVWMADFVFTSCETVCPPMTYNMTKLNEALEEEGVED
VQFVSFSVDPTVDTPEKMKEFMSGYDLAKADWQFLSGYSQDEIETFAQQNFKALVRKPDEGTQVDHGTYFYLVDQEGKII
KAYPGFQNVPTEDIINDIKILQKS

Sequences:

>Translated_184_residues
MTTMLIVLAGCGQEIEDPLNWEVEAFEYTNQDEEMVSLDDLKGKVWMADFVFTSCETVCPPMTYNMTKLNEALEEEGVED
VQFVSFSVDPTVDTPEKMKEFMSGYDLAKADWQFLSGYSQDEIETFAQQNFKALVRKPDEGTQVDHGTYFYLVDQEGKII
KAYPGFQNVPTEDIINDIKILQKS
>Mature_183_residues
TTMLIVLAGCGQEIEDPLNWEVEAFEYTNQDEEMVSLDDLKGKVWMADFVFTSCETVCPPMTYNMTKLNEALEEEGVEDV
QFVSFSVDPTVDTPEKMKEFMSGYDLAKADWQFLSGYSQDEIETFAQQNFKALVRKPDEGTQVDHGTYFYLVDQEGKIIK
AYPGFQNVPTEDIINDIKILQKS

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21022; Mature: 20891

Theoretical pI: Translated: 3.83; Mature: 3.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTMLIVLAGCGQEIEDPLNWEVEAFEYTNQDEEMVSLDDLKGKVWMADFVFTSCETVCP
CCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEHHHCCCCEEEHHHHHHHHHHCCC
PMTYNMTKLNEALEEEGVEDVQFVSFSVDPTVDTPEKMKEFMSGYDLAKADWQFLSGYSQ
CCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCH
DEIETFAQQNFKALVRKPDEGTQVDHGTYFYLVDQEGKIIKAYPGFQNVPTEDIINDIKI
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHH
LQKS
HCCC
>Mature Secondary Structure 
TTMLIVLAGCGQEIEDPLNWEVEAFEYTNQDEEMVSLDDLKGKVWMADFVFTSCETVCP
CEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEHHHCCCCEEEHHHHHHHHHHCCC
PMTYNMTKLNEALEEEGVEDVQFVSFSVDPTVDTPEKMKEFMSGYDLAKADWQFLSGYSQ
CCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCH
DEIETFAQQNFKALVRKPDEGTQVDHGTYFYLVDQEGKIIKAYPGFQNVPTEDIINDIKI
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHH
LQKS
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]