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The map label for this gene is yecS [H]

Identifier: 229918160

GI number: 229918160

Start: 2398488

End: 2399138

Strand: Direct

Name: yecS [H]

Synonym: EAT1b_2440

Alternate gene names: 229918160

Gene position: 2398488-2399138 (Clockwise)

Preceding gene: 229918159

Following gene: 229918163

Centisome position: 79.95

GC content: 49.77

Gene sequence:

>651_bases
ATGAATGAACTGATCACGACCGTCATAGATAACCGCTCGGTCTATCTTGAAGCCGTCCAGCTCACGTTGATCGCCAGTGT
CCTGTCGATTCTTCTCGCCTTGGCGCTCGGTCTGATCATTGCTTTACTTCATAGTAGTCCGATTAAAATCGTACGGTTGT
TCACACGGACGTACATTTCGTTCTTCCGTGGAACACCGCTCTTACTTCAGTTGTTGATCTTATATGTTGGGCTCACAGGG
TTCGTTCAACTCAGTGGGATGCAGGCGCTCATCTTTGGATTAGGCTTCCACTTCGCTGCCTATATCTCAGAGGCGTTCCG
AGCAGCCATCAACTCGGTCGACAAAGGACAAGTGGAGGCGAGTGTCGCGCTCGGTATTCCGAAAATGAAACGCTTCAAAG
ACATCATTTTCCCGCAGGCGCTCTCACGTGCCATCCCACCTGTCTCGAACTCGGTCATCGACATCATCAAGTCAACGTCA
CTCGGTTCGGTCATCGCGGTTCAGGAGTTAACGTACGTGTCTGACCAAATTGCGGCAACGACATATTTAGTCATGCCGTT
GCTCTTGTTCTCTGCGTCGATTTACTGGATTTTATCGACCTTGATCCAAGCCGGTCAACACAAACTCGAACAGCGTTACG
CGATTCGATAA

Upstream 100 bases:

>100_bases
GCGACGTGCTAGACAAGTTGAACGATGCGCTCGCAGAGATGAAAGAAGACGGCACGATGAAAGAAATCGGTGAGAAGTAC
TTCGGTGAGGATATCAGTCA

Downstream 100 bases:

>100_bases
GAAAAACCTCGATTCAGACGAATCGAGGTTTTTTGTATGCCTTAACGGATGACTGCTTCAGTTTCTCCGTCGAAGAAGTG
TGCTTTTGTCATATCGAGTG

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNELITTVIDNRSVYLEAVQLTLIASVLSILLALALGLIIALLHSSPIKIVRLFTRTYISFFRGTPLLLQLLILYVGLTG
FVQLSGMQALIFGLGFHFAAYISEAFRAAINSVDKGQVEASVALGIPKMKRFKDIIFPQALSRAIPPVSNSVIDIIKSTS
LGSVIAVQELTYVSDQIAATTYLVMPLLLFSASIYWILSTLIQAGQHKLEQRYAIR

Sequences:

>Translated_216_residues
MNELITTVIDNRSVYLEAVQLTLIASVLSILLALALGLIIALLHSSPIKIVRLFTRTYISFFRGTPLLLQLLILYVGLTG
FVQLSGMQALIFGLGFHFAAYISEAFRAAINSVDKGQVEASVALGIPKMKRFKDIIFPQALSRAIPPVSNSVIDIIKSTS
LGSVIAVQELTYVSDQIAATTYLVMPLLLFSASIYWILSTLIQAGQHKLEQRYAIR
>Mature_216_residues
MNELITTVIDNRSVYLEAVQLTLIASVLSILLALALGLIIALLHSSPIKIVRLFTRTYISFFRGTPLLLQLLILYVGLTG
FVQLSGMQALIFGLGFHFAAYISEAFRAAINSVDKGQVEASVALGIPKMKRFKDIIFPQALSRAIPPVSNSVIDIIKSTS
LGSVIAVQELTYVSDQIAATTYLVMPLLLFSASIYWILSTLIQAGQHKLEQRYAIR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=213, Percent_Identity=40.3755868544601, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1788645, Length=207, Percent_Identity=31.8840579710145, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=28.8372093023256, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787030, Length=203, Percent_Identity=30.5418719211823, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1787086, Length=210, Percent_Identity=30, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082239, Length=203, Percent_Identity=32.0197044334975, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786873, Length=207, Percent_Identity=26.5700483091787, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787087, Length=221, Percent_Identity=26.2443438914027, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994930, Length=226, Percent_Identity=28.7610619469027, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786874, Length=165, Percent_Identity=23.6363636363636, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23715; Mature: 23715

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELITTVIDNRSVYLEAVQLTLIASVLSILLALALGLIIALLHSSPIKIVRLFTRTYIS
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FFRGTPLLLQLLILYVGLTGFVQLSGMQALIFGLGFHFAAYISEAFRAAINSVDKGQVEA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
SVALGIPKMKRFKDIIFPQALSRAIPPVSNSVIDIIKSTSLGSVIAVQELTYVSDQIAAT
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TYLVMPLLLFSASIYWILSTLIQAGQHKLEQRYAIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNELITTVIDNRSVYLEAVQLTLIASVLSILLALALGLIIALLHSSPIKIVRLFTRTYIS
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FFRGTPLLLQLLILYVGLTGFVQLSGMQALIFGLGFHFAAYISEAFRAAINSVDKGQVEA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
SVALGIPKMKRFKDIIFPQALSRAIPPVSNSVIDIIKSTSLGSVIAVQELTYVSDQIAAT
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TYLVMPLLLFSASIYWILSTLIQAGQHKLEQRYAIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]