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The map label for this gene is amyC [H]

Identifier: 229918045

GI number: 229918045

Start: 2276930

End: 2277832

Strand: Direct

Name: amyC [H]

Synonym: EAT1b_2324

Alternate gene names: 229918045

Gene position: 2276930-2277832 (Clockwise)

Preceding gene: 229918044

Following gene: 229918046

Centisome position: 75.9

GC content: 47.29

Gene sequence:

>903_bases
ATGACGACGGAAAAACTGGAACATGTCGAGACGAACGTAGAGAAGACACCGAAGCGCATTCCGCAACGTCCGCTTCGTCC
AGGAACGTATTCTTGGAATCTTGGAATCATTGAGCTCGTCGCCATCTTGCTCGGACTGCTCTATTTGGTCCCGTTCTATT
ACGTCGTCGCCAACTCGTTCAAATCGATGGCGGAAATCTTTACGAATACGTCCGCCTTACCGAACGAGTGGTTGACCTCA
AACTATACAGAGGCGTGGGAAGCGATGAATTATGGACGTGTCTTTTTGAACTCCCTTCTCATCACGGTCGGAGCGAATGC
GGTCATTGTCATCTTCACTTCGATGGCGGCATGGAAACTTGTTCGGACGAAACATTGGATTTCTACAATGATCTTTTTCT
TGTTCGTGGCTGCGATGGTCATTCCGTTCCAGTCCATCATGATTCCGCTCGTGAAAGTTTCAAGTATCCTCGGTCTGCTG
AATAGTCATTGGGGCCTGATCGTCATGTATCTAGGGTTTGGGTCTGGTATCTCGGTGTTCCTCTATCACGGATTCATGAA
GTCGATTCCTGAGGAGATTGAAGAAGCCGCCATCATTGACGGTTGCTCGACATGGGGTGTCTTCTGGCGCATCGTCTTTC
CACTTCTTAAGCCAATCACGGTGACAATCGTCATCTTGAACAGTCTATGGATTTGGAATGACTTCTTATTACCATCGCTC
GTTCTTCGTGATGTCGAGTTACGGACCATCCCGCTCGCGACATTCTATTTCTTTGGACAGTACACGAAACAATGGGATTT
GGCATTAGCAGGTTTAGTGTTAGGAATCGTTCCCCTTCTGGTCTTTTTCTTCGGCATGCAGAAGCATATCATCAAAGGGA
TCACAAGTGGTTCGATTAAATAA

Upstream 100 bases:

>100_bases
ATTATGGTCTCGGGTCAGCGAAAGCGGTCATCTTCTTCTTGGTCGTGGCTGCGATTACGGTGACGCAAGTGTACGTGACG
AAAAAACGGGAGGTGGAAGC

Downstream 100 bases:

>100_bases
CCCTCCCAAGGGAATCCTCCGTTCGCTACACGGAGGATTAATTTTTTTGAAAAAAATCGTTGACATTAGTCTGAATATTT
ATAATAATGAACTCAATTCA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTTEKLEHVETNVEKTPKRIPQRPLRPGTYSWNLGIIELVAILLGLLYLVPFYYVVANSFKSMAEIFTNTSALPNEWLTS
NYTEAWEAMNYGRVFLNSLLITVGANAVIVIFTSMAAWKLVRTKHWISTMIFFLFVAAMVIPFQSIMIPLVKVSSILGLL
NSHWGLIVMYLGFGSGISVFLYHGFMKSIPEEIEEAAIIDGCSTWGVFWRIVFPLLKPITVTIVILNSLWIWNDFLLPSL
VLRDVELRTIPLATFYFFGQYTKQWDLALAGLVLGIVPLLVFFFGMQKHIIKGITSGSIK

Sequences:

>Translated_300_residues
MTTEKLEHVETNVEKTPKRIPQRPLRPGTYSWNLGIIELVAILLGLLYLVPFYYVVANSFKSMAEIFTNTSALPNEWLTS
NYTEAWEAMNYGRVFLNSLLITVGANAVIVIFTSMAAWKLVRTKHWISTMIFFLFVAAMVIPFQSIMIPLVKVSSILGLL
NSHWGLIVMYLGFGSGISVFLYHGFMKSIPEEIEEAAIIDGCSTWGVFWRIVFPLLKPITVTIVILNSLWIWNDFLLPSL
VLRDVELRTIPLATFYFFGQYTKQWDLALAGLVLGIVPLLVFFFGMQKHIIKGITSGSIK
>Mature_299_residues
TTEKLEHVETNVEKTPKRIPQRPLRPGTYSWNLGIIELVAILLGLLYLVPFYYVVANSFKSMAEIFTNTSALPNEWLTSN
YTEAWEAMNYGRVFLNSLLITVGANAVIVIFTSMAAWKLVRTKHWISTMIFFLFVAAMVIPFQSIMIPLVKVSSILGLLN
SHWGLIVMYLGFGSGISVFLYHGFMKSIPEEIEEAAIIDGCSTWGVFWRIVFPLLKPITVTIVILNSLWIWNDFLLPSLV
LRDVELRTIPLATFYFFGQYTKQWDLALAGLVLGIVPLLVFFFGMQKHIIKGITSGSIK

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=275, Percent_Identity=24.7272727272727, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787571, Length=255, Percent_Identity=25.8823529411765, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790464, Length=141, Percent_Identity=30.4964539007092, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33998; Mature: 33867

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEKLEHVETNVEKTPKRIPQRPLRPGTYSWNLGIIELVAILLGLLYLVPFYYVVANSF
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KSMAEIFTNTSALPNEWLTSNYTEAWEAMNYGRVFLNSLLITVGANAVIVIFTSMAAWKL
HHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHH
VRTKHWISTMIFFLFVAAMVIPFQSIMIPLVKVSSILGLLNSHWGLIVMYLGFGSGISVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHCCCCHHHH
LYHGFMKSIPEEIEEAAIIDGCSTWGVFWRIVFPLLKPITVTIVILNSLWIWNDFLLPSL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRDVELRTIPLATFYFFGQYTKQWDLALAGLVLGIVPLLVFFFGMQKHIIKGITSGSIK
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTEKLEHVETNVEKTPKRIPQRPLRPGTYSWNLGIIELVAILLGLLYLVPFYYVVANSF
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KSMAEIFTNTSALPNEWLTSNYTEAWEAMNYGRVFLNSLLITVGANAVIVIFTSMAAWKL
HHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHH
VRTKHWISTMIFFLFVAAMVIPFQSIMIPLVKVSSILGLLNSHWGLIVMYLGFGSGISVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHCCCCHHHH
LYHGFMKSIPEEIEEAAIIDGCSTWGVFWRIVFPLLKPITVTIVILNSLWIWNDFLLPSL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRDVELRTIPLATFYFFGQYTKQWDLALAGLVLGIVPLLVFFFGMQKHIIKGITSGSIK
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408; 1854207 [H]