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The map label for this gene is amyD [H]

Identifier: 229918044

GI number: 229918044

Start: 2276028

End: 2276933

Strand: Direct

Name: amyD [H]

Synonym: EAT1b_2323

Alternate gene names: 229918044

Gene position: 2276028-2276933 (Clockwise)

Preceding gene: 229918040

Following gene: 229918045

Centisome position: 75.87

GC content: 46.69

Gene sequence:

>906_bases
ATGAATGAGACTACTAAACGGACGAAACGCAGAAGGAATTGGAAGAAACCTGCGAGCTTTATAGCATTTGTCGGACCGGC
TTTTCTGGCATTTGTCGCAATCGTACTCATCCCATTTTTTAATGGCATTTACTATAGTTTCACTGACTGGAACGGTGTGA
CCGGAGAACTGAACTTTGTCGGATTGGATAACTATCACCGCTTGTTTTTTGAAGATGAGCAGTTCCGCGCTTCTTTTTGG
ATTACGACGAAATATACGCTCGTGTCTGTCCTATTGACGAATATCGTCGGTTTCTCATTGGCGCTATTATTGACGATGAA
CATTAAGACGCGAAACTTCCTACGCACGATTTTCTTTATGCCGAACTTGATTGGTGGCTTGATTCTCGGGTTCATCTGGC
AGTTCATTTATGTGAAAGGATTTGCCTCGATCGGTGCGTTGACGGGGTGGAGCTTATTCGAATTACCGTGGCTCGGTGAT
GCGCAAACGGCATTTTGGGGAATCGTGATTGTCGCCATCTGGCAAGGCGGCGGGTATGTCATGGTCATCTACATCGCGGC
GCTACAAAACGTGCCGACTGATTTGATGGAGGCGGCACGAATTGATGGGGCAAACCGTCTTAAGATGCTCCGTCATATCA
CGCTACCGATGATTATGCCATCGATCACCATCTGTTTGTTCCTGACCATCTCTTGGTCGTTCAAAGTGTTTGATACGAAC
TTGTCGCTCACGAATGGTGGACCGTTCAAATCGACCGAGATGTTGGCCTTAAATATTTATACGGAGTCTTTTGTGAATAA
CAATTATGGTCTCGGGTCAGCGAAAGCGGTCATCTTCTTCTTGGTCGTGGCTGCGATTACGGTGACGCAAGTGTACGTGA
CGAAAAAACGGGAGGTGGAAGCATGA

Upstream 100 bases:

>100_bases
AAACTCATTCATTCCGTTCAATATTTTCCACCCTTTCCGTCAAATGTATCCGTTTTCATAAAAGGTTTGACACGGTACAT
TGATAGTGGAGGCGATACAC

Downstream 100 bases:

>100_bases
CGACGGAAAAACTGGAACATGTCGAGACGAACGTAGAGAAGACACCGAAGCGCATTCCGCAACGTCCGCTTCGTCCAGGA
ACGTATTCTTGGAATCTTGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNETTKRTKRRRNWKKPASFIAFVGPAFLAFVAIVLIPFFNGIYYSFTDWNGVTGELNFVGLDNYHRLFFEDEQFRASFW
ITTKYTLVSVLLTNIVGFSLALLLTMNIKTRNFLRTIFFMPNLIGGLILGFIWQFIYVKGFASIGALTGWSLFELPWLGD
AQTAFWGIVIVAIWQGGGYVMVIYIAALQNVPTDLMEAARIDGANRLKMLRHITLPMIMPSITICLFLTISWSFKVFDTN
LSLTNGGPFKSTEMLALNIYTESFVNNNYGLGSAKAVIFFLVVAAITVTQVYVTKKREVEA

Sequences:

>Translated_301_residues
MNETTKRTKRRRNWKKPASFIAFVGPAFLAFVAIVLIPFFNGIYYSFTDWNGVTGELNFVGLDNYHRLFFEDEQFRASFW
ITTKYTLVSVLLTNIVGFSLALLLTMNIKTRNFLRTIFFMPNLIGGLILGFIWQFIYVKGFASIGALTGWSLFELPWLGD
AQTAFWGIVIVAIWQGGGYVMVIYIAALQNVPTDLMEAARIDGANRLKMLRHITLPMIMPSITICLFLTISWSFKVFDTN
LSLTNGGPFKSTEMLALNIYTESFVNNNYGLGSAKAVIFFLVVAAITVTQVYVTKKREVEA
>Mature_301_residues
MNETTKRTKRRRNWKKPASFIAFVGPAFLAFVAIVLIPFFNGIYYSFTDWNGVTGELNFVGLDNYHRLFFEDEQFRASFW
ITTKYTLVSVLLTNIVGFSLALLLTMNIKTRNFLRTIFFMPNLIGGLILGFIWQFIYVKGFASIGALTGWSLFELPWLGD
AQTAFWGIVIVAIWQGGGYVMVIYIAALQNVPTDLMEAARIDGANRLKMLRHITLPMIMPSITICLFLTISWSFKVFDTN
LSLTNGGPFKSTEMLALNIYTESFVNNNYGLGSAKAVIFFLVVAAITVTQVYVTKKREVEA

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=247, Percent_Identity=28.7449392712551, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789861, Length=295, Percent_Identity=26.1016949152542, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790465, Length=254, Percent_Identity=27.5590551181102, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34045; Mature: 34045

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETTKRTKRRRNWKKPASFIAFVGPAFLAFVAIVLIPFFNGIYYSFTDWNGVTGELNFV
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEE
GLDNYHRLFFEDEQFRASFWITTKYTLVSVLLTNIVGFSLALLLTMNIKTRNFLRTIFFM
ECCCCEEEEEECCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
PNLIGGLILGFIWQFIYVKGFASIGALTGWSLFELPWLGDAQTAFWGIVIVAIWQGGGYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCHHHHHHEEEEEEEECCCEE
MVIYIAALQNVPTDLMEAARIDGANRLKMLRHITLPMIMPSITICLFLTISWSFKVFDTN
EEHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEEEEEE
LSLTNGGPFKSTEMLALNIYTESFVNNNYGLGSAKAVIFFLVVAAITVTQVYVTKKREVE
EEECCCCCCCCCEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCC
A
C
>Mature Secondary Structure
MNETTKRTKRRRNWKKPASFIAFVGPAFLAFVAIVLIPFFNGIYYSFTDWNGVTGELNFV
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEE
GLDNYHRLFFEDEQFRASFWITTKYTLVSVLLTNIVGFSLALLLTMNIKTRNFLRTIFFM
ECCCCEEEEEECCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
PNLIGGLILGFIWQFIYVKGFASIGALTGWSLFELPWLGDAQTAFWGIVIVAIWQGGGYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCHHHHHHEEEEEEEECCCEE
MVIYIAALQNVPTDLMEAARIDGANRLKMLRHITLPMIMPSITICLFLTISWSFKVFDTN
EEHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEEEEEE
LSLTNGGPFKSTEMLALNIYTESFVNNNYGLGSAKAVIFFLVVAAITVTQVYVTKKREVE
EEECCCCCCCCCEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]