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The map label for this gene is yodJ [H]

Identifier: 229917579

GI number: 229917579

Start: 1824125

End: 1824964

Strand: Reverse

Name: yodJ [H]

Synonym: EAT1b_1854

Alternate gene names: 229917579

Gene position: 1824964-1824125 (Counterclockwise)

Preceding gene: 229917582

Following gene: 229917578

Centisome position: 60.83

GC content: 48.81

Gene sequence:

>840_bases
ATGAAGTCCCTGCGTATTTTTGTCATTTGTCTGCTGTTGTTTCAAGTGTCGCCGGTGACAGCGGCATCCTCGTCCCCACA
ACCAGGTTACACGATTAAAACAACCTATTTGTACGGTCGTGCCATGCAATCTTCCCCTATCCTTAAGACGCTACGAACGA
ACGTCCCAGTCCGCTATACGACCTATAATCGGAGTTGGTCGAACGTCTACATCGGAAATACGAAGTACTTCACTCCATCT
GCCAACTTGAAAGCCGGTATCCCGAAGATGCCATCTGCCGATCGTTTACGACTAGTCAACAAGGCGAATGGACTCCCGTC
CACTTATCGTTCCCCACAACTTGTCACGTTAACCATTCCAACTGTTTATCAAAAAGGGAGTGAACGGACCTTGATGACGG
CGGAGGCAGCCTATGCTCTGGCTAAACTGTATTACGCGGGTCGGAAGCAAGGTCATACGTTATACGCCCTTAGCGCCTAC
CGATCGTACTCGACCCAAAAATCGCTCTACACCTATTATGTCAATACACGCGGGGTCGCATACGCTTCAAAATATGTGGC
ACGTCCCGGTCACAGTGAACATCAAACAGGTCTCGCCGTTGATATGACGAGCCAACGTATGCGTCTAGGGCTATATGAAT
CCTTCGACCGATCGCCTGAAGGGAAGTGGATGCTTCAAAACGCCCATCTCTACGGATTTATCGTACGCTATCCAAAAGGA
AAAGAGAAAATCACAGGATACAATTACGAACCTTGGCATTTGCGTTATGTCGGTGTCACTGAAGCGACGATGATGAAGCA
GAAAAACTGGGCGTTCGAAGAATGGTGGAGCAGACGTTGA

Upstream 100 bases:

>100_bases
AGGCGTATCCTCTTCCGACCTGTGGGCGGATAAAAGATGTGCACTCTTTCAGAAAAAAGGGAAAAGGAACATCATCTAAC
TCTCGAGGAGGCGTTTTGCC

Downstream 100 bases:

>100_bases
GTGAGCATCCTTTTTCAGGCATTTCCCTGTTCACGTTATAATGGAGTCATCTTATTCGTATAGGGGGAAATGTGGGATGT
GGATTGTCATGAACAAACTA

Product: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKSLRIFVICLLLFQVSPVTAASSSPQPGYTIKTTYLYGRAMQSSPILKTLRTNVPVRYTTYNRSWSNVYIGNTKYFTPS
ANLKAGIPKMPSADRLRLVNKANGLPSTYRSPQLVTLTIPTVYQKGSERTLMTAEAAYALAKLYYAGRKQGHTLYALSAY
RSYSTQKSLYTYYVNTRGVAYASKYVARPGHSEHQTGLAVDMTSQRMRLGLYESFDRSPEGKWMLQNAHLYGFIVRYPKG
KEKITGYNYEPWHLRYVGVTEATMMKQKNWAFEEWWSRR

Sequences:

>Translated_279_residues
MKSLRIFVICLLLFQVSPVTAASSSPQPGYTIKTTYLYGRAMQSSPILKTLRTNVPVRYTTYNRSWSNVYIGNTKYFTPS
ANLKAGIPKMPSADRLRLVNKANGLPSTYRSPQLVTLTIPTVYQKGSERTLMTAEAAYALAKLYYAGRKQGHTLYALSAY
RSYSTQKSLYTYYVNTRGVAYASKYVARPGHSEHQTGLAVDMTSQRMRLGLYESFDRSPEGKWMLQNAHLYGFIVRYPKG
KEKITGYNYEPWHLRYVGVTEATMMKQKNWAFEEWWSRR
>Mature_279_residues
MKSLRIFVICLLLFQVSPVTAASSSPQPGYTIKTTYLYGRAMQSSPILKTLRTNVPVRYTTYNRSWSNVYIGNTKYFTPS
ANLKAGIPKMPSADRLRLVNKANGLPSTYRSPQLVTLTIPTVYQKGSERTLMTAEAAYALAKLYYAGRKQGHTLYALSAY
RSYSTQKSLYTYYVNTRGVAYASKYVARPGHSEHQTGLAVDMTSQRMRLGLYESFDRSPEGKWMLQNAHLYGFIVRYPKG
KEKITGYNYEPWHLRYVGVTEATMMKQKNWAFEEWWSRR

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 32004; Mature: 32004

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLRIFVICLLLFQVSPVTAASSSPQPGYTIKTTYLYGRAMQSSPILKTLRTNVPVRYT
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHCCCCEEEE
TYNRSWSNVYIGNTKYFTPSANLKAGIPKMPSADRLRLVNKANGLPSTYRSPQLVTLTIP
EECCCCCEEEECCEEEECCCCCCCCCCCCCCCHHHEEEEHHCCCCCCCCCCCEEEEEEEC
TVYQKGSERTLMTAEAAYALAKLYYAGRKQGHTLYALSAYRSYSTQKSLYTYYVNTRGVA
HHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCEE
YASKYVARPGHSEHQTGLAVDMTSQRMRLGLYESFDRSPEGKWMLQNAHLYGFIVRYPKG
HHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEECCCC
KEKITGYNYEPWHLRYVGVTEATMMKQKNWAFEEWWSRR
CHHCCCCCCCCEEEEEEECCHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MKSLRIFVICLLLFQVSPVTAASSSPQPGYTIKTTYLYGRAMQSSPILKTLRTNVPVRYT
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHCCCCEEEE
TYNRSWSNVYIGNTKYFTPSANLKAGIPKMPSADRLRLVNKANGLPSTYRSPQLVTLTIP
EECCCCCEEEECCEEEECCCCCCCCCCCCCCCHHHEEEEHHCCCCCCCCCCCEEEEEEEC
TVYQKGSERTLMTAEAAYALAKLYYAGRKQGHTLYALSAYRSYSTQKSLYTYYVNTRGVA
HHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCEE
YASKYVARPGHSEHQTGLAVDMTSQRMRLGLYESFDRSPEGKWMLQNAHLYGFIVRYPKG
HHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEECCCC
KEKITGYNYEPWHLRYVGVTEATMMKQKNWAFEEWWSRR
CHHCCCCCCCCEEEEEEECCHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]