| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is 229917503
Identifier: 229917503
GI number: 229917503
Start: 1745511
End: 1746161
Strand: Direct
Name: 229917503
Synonym: EAT1b_1778
Alternate gene names: NA
Gene position: 1745511-1746161 (Clockwise)
Preceding gene: 229917502
Following gene: 229917505
Centisome position: 58.19
GC content: 42.86
Gene sequence:
>651_bases ATGTCAGATCCATTTATTCAAAACGAACAATATAATCTCATCAAAGAACAAGTGATGCTCGTCAAAGAGAGTCGAATGCA AAGCCTGCCGCCTTCTGTCTTGCGAGCAGTCATCGACTTGGCACAATCGAAAGTGATGTATGCATTCCCTGAGGCAACGA CTGAACAACTAAAGCTGTTACAGTTCACAACGCTACAGACGAACGAAGCGTTCGACGAATATATGCAACGATTACGAGAA TGGGTTCAACCATTTCCCGTTATTTCTGCCGAGCAACTGAAGAGTTTGTTCCCGAAACAAAAGAAGCTTCGTTTACCGGA GTTATCCGATGTTGATTTTGGACGACTCACGTATCTAGGTTGGAACGATGGACGTTCCAATCAAAAGTTGATAATTTGCC AATACGAAGGTCAATTGATTGGCATTGCATGTAAACCGAGTACGAATACGAAGAAAAATATATGTGCCTTTTGTAATCAG TTCACGGATGTGACGTACTGCGTTACGATCACGAAAGCGAAACAAGCGAAAAATCCGGACTATTACAAAGCCATCGGCAC ATATGTATGTGTAGACAGTAAGACGTGCAATGAACACATCACGAGCCAAGAGGCTTTGCATACTTTTGTTCATACGGCAC TGCAGACCTGA
Upstream 100 bases:
>100_bases AGTCGTGCCTTTTTAGGTCGACTATATTTCTTAATCAAAGTGTACACAGTAAGGAAGCATTGTTTCCTGTAAACTGAGAA TTAAGGAAGGGGGCGACAAA
Downstream 100 bases:
>100_bases CAATCCAGTCAGGTCTTTTTATGTTAAATCAACAAAACCAATCAAGCGCCATGGTTTTCAATTTTATTCACGAGCAGTCT GTTCATTCTTTAATATGCTT
Product: Fibronectin-binding family protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MSDPFIQNEQYNLIKEQVMLVKESRMQSLPPSVLRAVIDLAQSKVMYAFPEATTEQLKLLQFTTLQTNEAFDEYMQRLRE WVQPFPVISAEQLKSLFPKQKKLRLPELSDVDFGRLTYLGWNDGRSNQKLIICQYEGQLIGIACKPSTNTKKNICAFCNQ FTDVTYCVTITKAKQAKNPDYYKAIGTYVCVDSKTCNEHITSQEALHTFVHTALQT
Sequences:
>Translated_216_residues MSDPFIQNEQYNLIKEQVMLVKESRMQSLPPSVLRAVIDLAQSKVMYAFPEATTEQLKLLQFTTLQTNEAFDEYMQRLRE WVQPFPVISAEQLKSLFPKQKKLRLPELSDVDFGRLTYLGWNDGRSNQKLIICQYEGQLIGIACKPSTNTKKNICAFCNQ FTDVTYCVTITKAKQAKNPDYYKAIGTYVCVDSKTCNEHITSQEALHTFVHTALQT >Mature_215_residues SDPFIQNEQYNLIKEQVMLVKESRMQSLPPSVLRAVIDLAQSKVMYAFPEATTEQLKLLQFTTLQTNEAFDEYMQRLREW VQPFPVISAEQLKSLFPKQKKLRLPELSDVDFGRLTYLGWNDGRSNQKLIICQYEGQLIGIACKPSTNTKKNICAFCNQF TDVTYCVTITKAKQAKNPDYYKAIGTYVCVDSKTCNEHITSQEALHTFVHTALQT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24808; Mature: 24677
Theoretical pI: Translated: 8.03; Mature: 8.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPFIQNEQYNLIKEQVMLVKESRMQSLPPSVLRAVIDLAQSKVMYAFPEATTEQLKLL CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHH QFTTLQTNEAFDEYMQRLREWVQPFPVISAEQLKSLFPKQKKLRLPELSDVDFGRLTYLG HHEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEE WNDGRSNQKLIICQYEGQLIGIACKPSTNTKKNICAFCNQFTDVTYCVTITKAKQAKNPD CCCCCCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEEEECHHCCCCCH YYKAIGTYVCVDSKTCNEHITSQEALHTFVHTALQT HHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SDPFIQNEQYNLIKEQVMLVKESRMQSLPPSVLRAVIDLAQSKVMYAFPEATTEQLKLL CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHH QFTTLQTNEAFDEYMQRLREWVQPFPVISAEQLKSLFPKQKKLRLPELSDVDFGRLTYLG HHEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEE WNDGRSNQKLIICQYEGQLIGIACKPSTNTKKNICAFCNQFTDVTYCVTITKAKQAKNPD CCCCCCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEEEECHHCCCCCH YYKAIGTYVCVDSKTCNEHITSQEALHTFVHTALQT HHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA