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The map label for this gene is pdxS [H]

Identifier: 229917443

GI number: 229917443

Start: 1677166

End: 1678056

Strand: Reverse

Name: pdxS [H]

Synonym: EAT1b_1718

Alternate gene names: 229917443

Gene position: 1678056-1677166 (Counterclockwise)

Preceding gene: 229917448

Following gene: 229917442

Centisome position: 55.94

GC content: 54.1

Gene sequence:

>891_bases
ATGGAAAAGAGACAAGTAGGGACAGATAAAGTAAAACGTGGGATGGCAGAAATGCAAAAAGGTGGCGTCATCATGGACGT
CATCAACGCCGAACAGGCAAAGATCGCTGAAGCTGCCGGTGCTGTGGCTGTCATGGCGCTCGAACGTGTACCATCAGATA
TCCGTAAAATGGGTGGCGTTGCCCGTATGGCTGACCCGACAATCATTGAAGATGTCATGGGGGCAGTATCTGTACCGGTT
ATGGCAAAATGCCGGATCGGGCACATCGCTGAAGCACGCGTTCTCGAGTCGATGGGGGTCGACTTCATTGATGAGAGCGA
AGTGTTGACACCAGCCGACGAAGAGTTCCACTTGTACAAGCGCGACTACACGGCGCCGTTCGTATGTGGAGCACGCGACC
TCGGTGAAGCAGCCCGCCGTATCGGTGAAGGGGCAGCGATGATTCGTACAAAAGGGGAGCCAGGAACAGGGAACATCGTC
GAAGCGGTTCGTCATATGCGTACAGTCCAAGCGCAAGTGAAACGTCTCTTGTCGATGAGTGTGGATGAGGTCATGACAGA
GGCGCGCGACCTCGGTGCACCGTTTGAAGTATTGATGCAGATTCGTGAAGCGGGTCGTCTCCCGGTCGTAAACTTTGCGG
CAGGTGGAATTGCGACACCAGCGGACGCTGCCTTGATGATGCATCTCGGGGCAGACGGAGTCTTTGTCGGATCAGGGATC
TTCAAAGCAGAGAATCCAGAGAAATTTGCACGTGCCATCGTGGAAGCTACGACGTACCACGATGACTATGAGCGGATCGC
GCACTTGTCAAAAGGATTGGGTGAGGCGATGAAAGGACTTGACGTCCGCACGCTCAAAGAAGAAGAACTCATGGCACCAC
GAGGCTGGTAA

Upstream 100 bases:

>100_bases
ATTTAAACTGACCACTTTAAATAATAAGAAACTGACACTTTTAATATAGTCAATACAACTTATACTAGCAAGTAGAACAC
GAACCAATGGAGGGATTTCA

Downstream 100 bases:

>100_bases
GATGGTGACGATTGGCGTATTAGGGATGCAAGGTGCGATTCGCGAGCATGTTCGCATGCTGGAAACGCTCGGTGCCCAAA
CCGTTGTAGTCCGCTCGCTA

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MEKRQVGTDKVKRGMAEMQKGGVIMDVINAEQAKIAEAAGAVAVMALERVPSDIRKMGGVARMADPTIIEDVMGAVSVPV
MAKCRIGHIAEARVLESMGVDFIDESEVLTPADEEFHLYKRDYTAPFVCGARDLGEAARRIGEGAAMIRTKGEPGTGNIV
EAVRHMRTVQAQVKRLLSMSVDEVMTEARDLGAPFEVLMQIREAGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGI
FKAENPEKFARAIVEATTYHDDYERIAHLSKGLGEAMKGLDVRTLKEEELMAPRGW

Sequences:

>Translated_296_residues
MEKRQVGTDKVKRGMAEMQKGGVIMDVINAEQAKIAEAAGAVAVMALERVPSDIRKMGGVARMADPTIIEDVMGAVSVPV
MAKCRIGHIAEARVLESMGVDFIDESEVLTPADEEFHLYKRDYTAPFVCGARDLGEAARRIGEGAAMIRTKGEPGTGNIV
EAVRHMRTVQAQVKRLLSMSVDEVMTEARDLGAPFEVLMQIREAGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGI
FKAENPEKFARAIVEATTYHDDYERIAHLSKGLGEAMKGLDVRTLKEEELMAPRGW
>Mature_296_residues
MEKRQVGTDKVKRGMAEMQKGGVIMDVINAEQAKIAEAAGAVAVMALERVPSDIRKMGGVARMADPTIIEDVMGAVSVPV
MAKCRIGHIAEARVLESMGVDFIDESEVLTPADEEFHLYKRDYTAPFVCGARDLGEAARRIGEGAAMIRTKGEPGTGNIV
EAVRHMRTVQAQVKRLLSMSVDEVMTEARDLGAPFEVLMQIREAGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGI
FKAENPEKFARAIVEATTYHDDYERIAHLSKGLGEAMKGLDVRTLKEEELMAPRGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=277, Percent_Identity=57.4007220216607, Blast_Score=333, Evalue=1e-92,
Organism=Saccharomyces cerevisiae, GI6323996, Length=280, Percent_Identity=57.1428571428571, Blast_Score=330, Evalue=2e-91,
Organism=Saccharomyces cerevisiae, GI6321049, Length=280, Percent_Identity=57.1428571428571, Blast_Score=329, Evalue=3e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31981; Mature: 31981

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRQVGTDKVKRGMAEMQKGGVIMDVINAEQAKIAEAAGAVAVMALERVPSDIRKMGGV
CCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCC
ARMADPTIIEDVMGAVSVPVMAKCRIGHIAEARVLESMGVDFIDESEVLTPADEEFHLYK
HHHCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
RDYTAPFVCGARDLGEAARRIGEGAAMIRTKGEPGTGNIVEAVRHMRTVQAQVKRLLSMS
HCCCCCCEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VDEVMTEARDLGAPFEVLMQIREAGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGI
HHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCC
FKAENPEKFARAIVEATTYHDDYERIAHLSKGLGEAMKGLDVRTLKEEELMAPRGW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHCCCCCC
>Mature Secondary Structure
MEKRQVGTDKVKRGMAEMQKGGVIMDVINAEQAKIAEAAGAVAVMALERVPSDIRKMGGV
CCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCC
ARMADPTIIEDVMGAVSVPVMAKCRIGHIAEARVLESMGVDFIDESEVLTPADEEFHLYK
HHHCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
RDYTAPFVCGARDLGEAARRIGEGAAMIRTKGEPGTGNIVEAVRHMRTVQAQVKRLLSMS
HCCCCCCEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VDEVMTEARDLGAPFEVLMQIREAGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGI
HHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCC
FKAENPEKFARAIVEATTYHDDYERIAHLSKGLGEAMKGLDVRTLKEEELMAPRGW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA