| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is 229917057
Identifier: 229917057
GI number: 229917057
Start: 1302524
End: 1303231
Strand: Direct
Name: 229917057
Synonym: EAT1b_1331
Alternate gene names: NA
Gene position: 1302524-1303231 (Clockwise)
Preceding gene: 229917056
Following gene: 229917058
Centisome position: 43.42
GC content: 45.9
Gene sequence:
>708_bases ATGAAATCCGTATTATTGGTCGTATCCAACCCAACTGTCTCGACCACAACAAATTGGCCAGTCGGTTTTTGGTTATCTGA ATTGACGCACCCGTATGATGTGTTGAGTGCAACAGGTCATCAACTGACGATTGCTAGTCCAGACGGTGGCAAAGTCGAGT GGGATGCGCTGAGCGATCCGACACATGAAAGTGGTTACTCGAAACATGATACGTTGTCTCTCAAGTATCTAGACGATGCT GATTTCCTTGCTTTGCTAGAAAATACGCCAAAAATTAGTGATCTCGACCTTTCCGGTTTCGATGCGATTCTCGTTGCCGG CGGACAGGCACCCATGTTTACGTTCCAAGATGCCGACTCATTAAAAGAAGCATTCGAAGCGTTCTACGCAAGCGGAAAAC CTTCTATCGCCCTTTGCCACGGAACGAGTTTATTGTTATACCTGCAAGAGGAAAATCGTCCATTCGTTGAAGGTAAAGTG ATGACAGGATTTACAAACGAAGAAGAAGATCAGGCCGATGCATCCGTAGGAATGAAAGTCATGCCATTCCGAATCGAAGA AGAAGCGATCAAGTTGGGCGCTCATTTCAAAAAAGCTGAACCTTGGACACCATACGTCGTTCGAGATGGTCATTTAATCA CTGGTCAGCAACAAGAATCTGGCCAAGCTGTCGCAGAAGAACTCGTTCGCTACTTTGAAGGTACATGA
Upstream 100 bases:
>100_bases AACAGAGTCACTCACCTAAAAGTGCGTACTTGTCCTCCTTTGTATAGCTGATACGATTGAAGAAAGTCATCGTATTCACC TAACGAAGGAGGAATTTTTT
Downstream 100 bases:
>100_bases CGAGGGAGGAGATGACATGAGTGAGTGGTCTCGACCACATGTTCATTCAACCGAAGGACATCGACAAGCTTCCTGGATCG AACTCTTTTTCGACCTTGTG
Product: ThiJ/PfpI domain protein
Products: NA
Alternate protein names: ThiJ/PfpI Domain-Containing Protein; ThiJ/PfpI Family Protein; ThiJ/PfpI; DJ-1/PfpI Family Protein; Intracellular Protease/Amidase; DJ-1/PfpI Family; NonF-Related Protein; Peptidase; DJ-1/PfPI Family Protein; Intracellular Protease/Amidase-Like Protein; Intracellular Protease/Amidase ThiJ/PfpL Family; Exported Pfp1 Family Protein; Intracellular Protease/Amidase-Like; C56 Family Peptidase; Amidotransferase; PFPI-Like Cystiene Protease; Protease I; ThiJ/PfpI Protein; Regulatory Protein; ThiJ Protein; NonF Protein; Chaperone Protein; Thij/Pfpi Domain-Containing Protein; Amidotransferase/Amidase; Transcriptional Regulator Fis Family; Protease; Intracellular Protease/Amidase ThiJ/PfpL Family Protein; Pfp1 Family Protein; Fis Family Transcriptional Regulator; DJ-1/PfpI Family Transcriptional Regulator
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MKSVLLVVSNPTVSTTTNWPVGFWLSELTHPYDVLSATGHQLTIASPDGGKVEWDALSDPTHESGYSKHDTLSLKYLDDA DFLALLENTPKISDLDLSGFDAILVAGGQAPMFTFQDADSLKEAFEAFYASGKPSIALCHGTSLLLYLQEENRPFVEGKV MTGFTNEEEDQADASVGMKVMPFRIEEEAIKLGAHFKKAEPWTPYVVRDGHLITGQQQESGQAVAEELVRYFEGT
Sequences:
>Translated_235_residues MKSVLLVVSNPTVSTTTNWPVGFWLSELTHPYDVLSATGHQLTIASPDGGKVEWDALSDPTHESGYSKHDTLSLKYLDDA DFLALLENTPKISDLDLSGFDAILVAGGQAPMFTFQDADSLKEAFEAFYASGKPSIALCHGTSLLLYLQEENRPFVEGKV MTGFTNEEEDQADASVGMKVMPFRIEEEAIKLGAHFKKAEPWTPYVVRDGHLITGQQQESGQAVAEELVRYFEGT >Mature_235_residues MKSVLLVVSNPTVSTTTNWPVGFWLSELTHPYDVLSATGHQLTIASPDGGKVEWDALSDPTHESGYSKHDTLSLKYLDDA DFLALLENTPKISDLDLSGFDAILVAGGQAPMFTFQDADSLKEAFEAFYASGKPSIALCHGTSLLLYLQEENRPFVEGKV MTGFTNEEEDQADASVGMKVMPFRIEEEAIKLGAHFKKAEPWTPYVVRDGHLITGQQQESGQAVAEELVRYFEGT
Specific function: Unknown
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6320742, Length=228, Percent_Identity=25.8771929824561, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324967, Length=203, Percent_Identity=26.1083743842365, Blast_Score=65, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6324975, Length=203, Percent_Identity=26.1083743842365, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323984, Length=203, Percent_Identity=25.615763546798, Blast_Score=62, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25808; Mature: 25808
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSVLLVVSNPTVSTTTNWPVGFWLSELTHPYDVLSATGHQLTIASPDGGKVEWDALSDP CCEEEEEEECCCEECCCCCCHHHHHHHHCCHHHHHHCCCCEEEEECCCCCEEEECCCCCC THESGYSKHDTLSLKYLDDADFLALLENTPKISDLDLSGFDAILVAGGQAPMFTFQDADS CCCCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEECCHHH LKEAFEAFYASGKPSIALCHGTSLLLYLQEENRPFVEGKVMTGFTNEEEDQADASVGMKV HHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHCCEEE MPFRIEEEAIKLGAHFKKAEPWTPYVVRDGHLITGQQQESGQAVAEELVRYFEGT EEEEEHHHHHHHCCCCCCCCCCCCEEEECCEEEECCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKSVLLVVSNPTVSTTTNWPVGFWLSELTHPYDVLSATGHQLTIASPDGGKVEWDALSDP CCEEEEEEECCCEECCCCCCHHHHHHHHCCHHHHHHCCCCEEEEECCCCCEEEECCCCCC THESGYSKHDTLSLKYLDDADFLALLENTPKISDLDLSGFDAILVAGGQAPMFTFQDADS CCCCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEECCHHH LKEAFEAFYASGKPSIALCHGTSLLLYLQEENRPFVEGKVMTGFTNEEEDQADASVGMKV HHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHCCEEE MPFRIEEEAIKLGAHFKKAEPWTPYVVRDGHLITGQQQESGQAVAEELVRYFEGT EEEEEHHHHHHHCCCCCCCCCCCCEEEECCEEEECCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA