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The map label for this gene is rpiR [C]

Identifier: 229917012

GI number: 229917012

Start: 1262841

End: 1263644

Strand: Reverse

Name: rpiR [C]

Synonym: EAT1b_1286

Alternate gene names: 229917012

Gene position: 1263644-1262841 (Counterclockwise)

Preceding gene: 229917013

Following gene: 229917011

Centisome position: 42.12

GC content: 45.52

Gene sequence:

>804_bases
GTGTGGGAGCAAATAAAACACGTGTATTCAGAAATGACGGGCAGTGAGAAAAAGATTGCGGATTATCTGATGGCGAACAT
GAATGAGGCAATCGAAATGAACATTACCGATTTAGCAAATGCGATTGCGACTTCACCAGGGACAATCACGCGGTTTTGCA
AAAAAATCGGAGTGGGAAGTTATAGTTCACTGAAGCTCATGATGCAAAAGACGTTGACGGAAACGAATTTGCCCCAAACG
ACTTCGCTCGAACCGATGCAGCGGTCATACATTGAATTGATTCAGACGACCGCTCATTTAATTGATCAGGATGAACTACT
TGCGATTTGTAAAGAGATTACATCGAGCCGATCCGTTCACTTATACGGATTAGGCAACGCCGGACTAGTGGCACAGGAAA
TGGAATACAGATTGAGACGGATGGGATTGTTGGCGACTACCGCTTTCGACAGTCACAGCATGGTCATGGACGCATCGATT
GTCACGTCAGAAGACGTAGTCATTGCCTTTTCGAATAGTGGAGAAAGTCGAGAAGTCGTCCAGGCGATGCAACTCGCGAA
AGAGTCGGGGTGTACGACAGTTGCATTCGTCGGTTATCAACATTCACCACTTGCTGAACTTGTCGACTATCGGTTGTTGA
CTGCCGGTGCCTCCGGCGAGGCATTCTTGATTAATACACAACTCCCACTTCTCTTCACAGCCGATGCGGTGACGAAGACA
TTGATGGAGACGAATGAAGCATTAAAAGCGCATTATCTACAAACACTTAAAGCACTTGATCGTTTAAAAGAAAGAAGTGA
ATAA

Upstream 100 bases:

>100_bases
GAATTCAAGTAATCTACGGTCCTTCTGTTACAATTATTAAGAATGAAGTCCAAGAGGCGTTAGGCCGGGGCGAATAACGA
ATGTGTTGGAGGGAAGAACC

Downstream 100 bases:

>100_bases
CTATTATGATAACGTTACCGACTGGATTGATTGTTTCGTGCCAGGCTTTAGAAGGTGAACCGCTCCATAGTGAATTCATT
ATGGGACGGATGGCTATTGC

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MWEQIKHVYSEMTGSEKKIADYLMANMNEAIEMNITDLANAIATSPGTITRFCKKIGVGSYSSLKLMMQKTLTETNLPQT
TSLEPMQRSYIELIQTTAHLIDQDELLAICKEITSSRSVHLYGLGNAGLVAQEMEYRLRRMGLLATTAFDSHSMVMDASI
VTSEDVVIAFSNSGESREVVQAMQLAKESGCTTVAFVGYQHSPLAELVDYRLLTAGASGEAFLINTQLPLLFTADAVTKT
LMETNEALKAHYLQTLKALDRLKERSE

Sequences:

>Translated_267_residues
MWEQIKHVYSEMTGSEKKIADYLMANMNEAIEMNITDLANAIATSPGTITRFCKKIGVGSYSSLKLMMQKTLTETNLPQT
TSLEPMQRSYIELIQTTAHLIDQDELLAICKEITSSRSVHLYGLGNAGLVAQEMEYRLRRMGLLATTAFDSHSMVMDASI
VTSEDVVIAFSNSGESREVVQAMQLAKESGCTTVAFVGYQHSPLAELVDYRLLTAGASGEAFLINTQLPLLFTADAVTKT
LMETNEALKAHYLQTLKALDRLKERSE
>Mature_267_residues
MWEQIKHVYSEMTGSEKKIADYLMANMNEAIEMNITDLANAIATSPGTITRFCKKIGVGSYSSLKLMMQKTLTETNLPQT
TSLEPMQRSYIELIQTTAHLIDQDELLAICKEITSSRSVHLYGLGNAGLVAQEMEYRLRRMGLLATTAFDSHSMVMDASI
VTSEDVVIAFSNSGESREVVQAMQLAKESGCTTVAFVGYQHSPLAELVDYRLLTAGASGEAFLINTQLPLLFTADAVTKT
LMETNEALKAHYLQTLKALDRLKERSE

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=209, Percent_Identity=24.8803827751196, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788767, Length=235, Percent_Identity=28.0851063829787, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082130, Length=227, Percent_Identity=25.9911894273128, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788159, Length=216, Percent_Identity=23.1481481481481, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 29534; Mature: 29534

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWEQIKHVYSEMTGSEKKIADYLMANMNEAIEMNITDLANAIATSPGTITRFCKKIGVGS
CHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEECHHHHHHHHHCCCCHHHHHHHHHCCCC
YSSLKLMMQKTLTETNLPQTTSLEPMQRSYIELIQTTAHLIDQDELLAICKEITSSRSVH
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEE
LYGLGNAGLVAQEMEYRLRRMGLLATTAFDSHSMVMDASIVTSEDVVIAFSNSGESREVV
EEECCCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEEHHEEECCCEEEEECCCCCHHHHH
QAMQLAKESGCTTVAFVGYQHSPLAELVDYRLLTAGASGEAFLINTQLPLLFTADAVTKT
HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEHHHHHHH
LMETNEALKAHYLQTLKALDRLKERSE
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWEQIKHVYSEMTGSEKKIADYLMANMNEAIEMNITDLANAIATSPGTITRFCKKIGVGS
CHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHEECHHHHHHHHHCCCCHHHHHHHHHCCCC
YSSLKLMMQKTLTETNLPQTTSLEPMQRSYIELIQTTAHLIDQDELLAICKEITSSRSVH
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEE
LYGLGNAGLVAQEMEYRLRRMGLLATTAFDSHSMVMDASIVTSEDVVIAFSNSGESREVV
EEECCCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEEHHEEECCCEEEEECCCCCHHHHH
QAMQLAKESGCTTVAFVGYQHSPLAELVDYRLLTAGASGEAFLINTQLPLLFTADAVTKT
HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEHHHHHHH
LMETNEALKAHYLQTLKALDRLKERSE
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]