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The map label for this gene is yddU [C]

Identifier: 229916899

GI number: 229916899

Start: 1142239

End: 1144935

Strand: Direct

Name: yddU [C]

Synonym: EAT1b_1172

Alternate gene names: 229916899

Gene position: 1142239-1144935 (Clockwise)

Preceding gene: 229916898

Following gene: 229916902

Centisome position: 38.08

GC content: 53.32

Gene sequence:

>2697_bases
ATGGGCCAACCCCGTTTTGCTAAAATTCCATACCGTACCTACACGATGGCGCTCGCGGTCGCTTGTCTCATCGGTGTCCT
GTTGTTCGGACTCGGAACGAGTTTTTATTGGCATGAAAAACAAGAAGCCATTGACCAGACGATTACGAACTTGAATCAGG
CGGCAGACCTGGCTGGCGTCGAAGCGTATGTGACACTGTTCGAGGCGGCGACCCGATATGAGGAACAGTCAAATCAGACG
TCGTCATTCCTGTCCACGCCTTACAAAGAACGTGCACTCCAATACAATGAGCGGTTATTGAACGACTTTGAGGACGGTGT
GAACGAACGGGAACGCGAGACGCTCGAGACGTTCTCAAACGAGTTGAATCAAATTCTGGAGACCGAACAGTTTGAAGAGG
TCCCGACCGACGTCATCAGTTCCATCAATCGACGCTGGCTATATCAAGCACTCGAGCAGACGAATCAATCGAATGCGGCA
TACGAGTTGACGGATGCCATCATGCGGATGCAGTCGATGCTCATGCGAAACCGTGACGCACTCTTCCGTGAACCGATTGA
TGCGGACCAACTTGAAAGTAGCGTGGACATGATCGTCGGTGAGGCGACACTCATCCAAACCATCCTTGCGTCAAACCCAG
AGCTACAGACGAAAGCAATCATCGACGTGGCGGATAGCGGTCGATCGTTTGCGAATATGGCGAATCGCGAAGCTTCTCTA
GAAGCCCGTTACGTCAACTCAACGAACGTCTATGAGGATGCCTATGGTGCCCTTCGTTCCGTCCGCTCGAATTCTGAGAC
GATGCTACGGGAAGAAAGTAAGCATTATCAAGTCCTGGCCACCACCTCATTCGTGATGACGTTGCTGTTATCGCTCGGAC
TCCTATTCCTGCTCTACTATACACGCAATCGCTACAATCACGACTTGGCGCATCTCAAGGCTCGCGCACTCGCTATCGAT
CCAAGCCTCGAACCGGTCGAGACCATGTTTCCGAAGACACATGACTTCCGAGGTATCGAGGACGAGTTACGCGAGATTGC
CGCGAGTGTCCATTCGACCGTTCACGAACTGGAGAATCGTTCACAAGACCTCGTACGTTATCATGAGCGCTGGTCGTCCC
TCTTCTCCGAGACGGGACTCGCTATCGCCCTCATGGATGACTCGTATAACTTGATTGAGCGCAACGAAATGTTCCGGCAG
TTTTTCGGTGATCGAAACTTATATGAGATCAACCAATTGTTCACCGAGACGGGTCGCCGCCTGTTCGAGCAAGCACTCGA
GGGCGTGACCGACCAAGGGACGAGCGCCCAGTTCATCATCCACCTAAAAGGCGAGCATCTCCGTTACTTGAACGTGAAGC
TGACACCGCTCAAGCGTGAGGAAAAGTTGACGTATTACCTCATCGTCGAAGATGAGACGGATCGGGTCGAACGGGAACGG
AAGGTCGACCGCCTCGTCCGGTTCGACTTGGCGACCAATCTGTATAACGAATATGGCTTTATCCGCAAGTGGGAGAAGCA
AGAGATTGACGGCGCATTCGTCCTCATCCGGATTCATGACTATCATCATCTCGTCGATTGGTACGACCCGGCGTACGCCG
ACCTGCTCATGATCGAGTTTGCGCGAGCCGTCGAGTCCCGTCTTTCGAAATATGCCCAACATCTCTTCGGTCGATATCGC
GATGACACGTTCATGCTGTATGTCCGAGGCTTCTCATACGAGGATGAGCATGAGCTGTTGGAGCTGTTCCCGACGGAAGT
GACGATCAACCATAAACGTCAAAACGTGCATATTCAAATCGGGGCGACCGAGACGGAAGGGGCATACAACGACTGTCTGT
TCAAGGCGATGAAGGCGTTACAACACGCAAAAGAGACACGTACCCCGTCGGTTTGGTACGACTCCGAGATTTTAGCTCAG
ATGCAACTCGCCGCACTCATTGAACAAGCGCTCCCGGACGCCATCCGCAGAGGTGACTTGACCGTCGCCTATCAACCGCA
AGTCGAGTTGAAAACCGGTCGTGTCGTCGGGGCAGAGGTGCTCGCGCGTTGGACACACCCGGACATCGGGGTCATCCCAC
CGAACGAGTTCATTCGCGTCGCGGAACGGTCCGATCAAATCCTATGGCTGTCGCATAATATTCTCGACCAGACGATCGCG
CAGCTCGTCGCGTGGCAAGGAACTGCATTTGAAGACATCTCCTTGTCGTTCAACTTGTCGGCCCATTCGGTCGACCCGTC
CATCGTGACGAAGCTTCGGGATTCGATCGAGGTCTATCCATGGCTACCGGATCGGTTGAAGATTGAATTGACCGAGTCGT
CGGATATCATGTCGTATGCGAGCGAGCTCGAACGATTAGAAGACATCGCCGACCTCGGCTATTGTCTCTCGATTGACGAC
TTCGGGACCGGCTACGCCTCATTCGAAGCGATTTGGCATCTACCAATTCAAGAAGTGAAGATTGACCGGATGTACGTGAG
TGGGAAGGCGAAAGAAAGTACGTCCTTCTTACGCGCCGTTTCCCGGTTCGCGAACGAGCAACAGTTGACCGCTCTCGCCG
AAGGGATCGAGACCGAGAGCGACCTGTCACGGATGCTTCGTGAAGGGGTCGAGCTCGGTCAAGGCTTCTATTTCTCACCC
GCTCTGGATGCGGCTTCATTTGAATCATGGGTCAACACAAAGGGACACTCGCGTTGA

Upstream 100 bases:

>100_bases
CCAAAAAACCCGACGAAAGTCGGGTTTTTCTTTCGTTTTGCAGGATTTTCATCGCCTGACCCGAATTCGGAAGTATGATG
AAGGAAAAAGGAGGTGCCGG

Downstream 100 bases:

>100_bases
GTGTCCCTTTTTTCAGCGTGCACGAATGTCTTCATATAACTGCCTCGTCGCTTCTGCCGAGGCCAGATTCAGATAAATCG
GTTCTTCCGACCAATCGAGT

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 898; Mature: 897

Protein sequence:

>898_residues
MGQPRFAKIPYRTYTMALAVACLIGVLLFGLGTSFYWHEKQEAIDQTITNLNQAADLAGVEAYVTLFEAATRYEEQSNQT
SSFLSTPYKERALQYNERLLNDFEDGVNERERETLETFSNELNQILETEQFEEVPTDVISSINRRWLYQALEQTNQSNAA
YELTDAIMRMQSMLMRNRDALFREPIDADQLESSVDMIVGEATLIQTILASNPELQTKAIIDVADSGRSFANMANREASL
EARYVNSTNVYEDAYGALRSVRSNSETMLREESKHYQVLATTSFVMTLLLSLGLLFLLYYTRNRYNHDLAHLKARALAID
PSLEPVETMFPKTHDFRGIEDELREIAASVHSTVHELENRSQDLVRYHERWSSLFSETGLAIALMDDSYNLIERNEMFRQ
FFGDRNLYEINQLFTETGRRLFEQALEGVTDQGTSAQFIIHLKGEHLRYLNVKLTPLKREEKLTYYLIVEDETDRVERER
KVDRLVRFDLATNLYNEYGFIRKWEKQEIDGAFVLIRIHDYHHLVDWYDPAYADLLMIEFARAVESRLSKYAQHLFGRYR
DDTFMLYVRGFSYEDEHELLELFPTEVTINHKRQNVHIQIGATETEGAYNDCLFKAMKALQHAKETRTPSVWYDSEILAQ
MQLAALIEQALPDAIRRGDLTVAYQPQVELKTGRVVGAEVLARWTHPDIGVIPPNEFIRVAERSDQILWLSHNILDQTIA
QLVAWQGTAFEDISLSFNLSAHSVDPSIVTKLRDSIEVYPWLPDRLKIELTESSDIMSYASELERLEDIADLGYCLSIDD
FGTGYASFEAIWHLPIQEVKIDRMYVSGKAKESTSFLRAVSRFANEQQLTALAEGIETESDLSRMLREGVELGQGFYFSP
ALDAASFESWVNTKGHSR

Sequences:

>Translated_898_residues
MGQPRFAKIPYRTYTMALAVACLIGVLLFGLGTSFYWHEKQEAIDQTITNLNQAADLAGVEAYVTLFEAATRYEEQSNQT
SSFLSTPYKERALQYNERLLNDFEDGVNERERETLETFSNELNQILETEQFEEVPTDVISSINRRWLYQALEQTNQSNAA
YELTDAIMRMQSMLMRNRDALFREPIDADQLESSVDMIVGEATLIQTILASNPELQTKAIIDVADSGRSFANMANREASL
EARYVNSTNVYEDAYGALRSVRSNSETMLREESKHYQVLATTSFVMTLLLSLGLLFLLYYTRNRYNHDLAHLKARALAID
PSLEPVETMFPKTHDFRGIEDELREIAASVHSTVHELENRSQDLVRYHERWSSLFSETGLAIALMDDSYNLIERNEMFRQ
FFGDRNLYEINQLFTETGRRLFEQALEGVTDQGTSAQFIIHLKGEHLRYLNVKLTPLKREEKLTYYLIVEDETDRVERER
KVDRLVRFDLATNLYNEYGFIRKWEKQEIDGAFVLIRIHDYHHLVDWYDPAYADLLMIEFARAVESRLSKYAQHLFGRYR
DDTFMLYVRGFSYEDEHELLELFPTEVTINHKRQNVHIQIGATETEGAYNDCLFKAMKALQHAKETRTPSVWYDSEILAQ
MQLAALIEQALPDAIRRGDLTVAYQPQVELKTGRVVGAEVLARWTHPDIGVIPPNEFIRVAERSDQILWLSHNILDQTIA
QLVAWQGTAFEDISLSFNLSAHSVDPSIVTKLRDSIEVYPWLPDRLKIELTESSDIMSYASELERLEDIADLGYCLSIDD
FGTGYASFEAIWHLPIQEVKIDRMYVSGKAKESTSFLRAVSRFANEQQLTALAEGIETESDLSRMLREGVELGQGFYFSP
ALDAASFESWVNTKGHSR
>Mature_897_residues
GQPRFAKIPYRTYTMALAVACLIGVLLFGLGTSFYWHEKQEAIDQTITNLNQAADLAGVEAYVTLFEAATRYEEQSNQTS
SFLSTPYKERALQYNERLLNDFEDGVNERERETLETFSNELNQILETEQFEEVPTDVISSINRRWLYQALEQTNQSNAAY
ELTDAIMRMQSMLMRNRDALFREPIDADQLESSVDMIVGEATLIQTILASNPELQTKAIIDVADSGRSFANMANREASLE
ARYVNSTNVYEDAYGALRSVRSNSETMLREESKHYQVLATTSFVMTLLLSLGLLFLLYYTRNRYNHDLAHLKARALAIDP
SLEPVETMFPKTHDFRGIEDELREIAASVHSTVHELENRSQDLVRYHERWSSLFSETGLAIALMDDSYNLIERNEMFRQF
FGDRNLYEINQLFTETGRRLFEQALEGVTDQGTSAQFIIHLKGEHLRYLNVKLTPLKREEKLTYYLIVEDETDRVERERK
VDRLVRFDLATNLYNEYGFIRKWEKQEIDGAFVLIRIHDYHHLVDWYDPAYADLLMIEFARAVESRLSKYAQHLFGRYRD
DTFMLYVRGFSYEDEHELLELFPTEVTINHKRQNVHIQIGATETEGAYNDCLFKAMKALQHAKETRTPSVWYDSEILAQM
QLAALIEQALPDAIRRGDLTVAYQPQVELKTGRVVGAEVLARWTHPDIGVIPPNEFIRVAERSDQILWLSHNILDQTIAQ
LVAWQGTAFEDISLSFNLSAHSVDPSIVTKLRDSIEVYPWLPDRLKIELTESSDIMSYASELERLEDIADLGYCLSIDDF
GTGYASFEAIWHLPIQEVKIDRMYVSGKAKESTSFLRAVSRFANEQQLTALAEGIETESDLSRMLREGVELGQGFYFSPA
LDAASFESWVNTKGHSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=444, Percent_Identity=26.8018018018018, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1787541, Length=249, Percent_Identity=30.5220883534137, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=31.9327731092437, Blast_Score=119, Evalue=9e-28,
Organism=Escherichia coli, GI226510982, Length=240, Percent_Identity=32.9166666666667, Blast_Score=119, Evalue=9e-28,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=29.0836653386454, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI1786507, Length=243, Percent_Identity=29.6296296296296, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI87081743, Length=253, Percent_Identity=31.6205533596838, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=27.6859504132231, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1787055, Length=265, Percent_Identity=23.0188679245283, Blast_Score=88, Evalue=3e-18,
Organism=Escherichia coli, GI87081980, Length=229, Percent_Identity=23.5807860262009, Blast_Score=74, Evalue=6e-14,
Organism=Escherichia coli, GI87082096, Length=238, Percent_Identity=26.0504201680672, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 103442; Mature: 103310

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQPRFAKIPYRTYTMALAVACLIGVLLFGLGTSFYWHEKQEAIDQTITNLNQAADLAGV
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHH
EAYVTLFEAATRYEEQSNQTSSFLSTPYKERALQYNERLLNDFEDGVNERERETLETFSN
HHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELNQILETEQFEEVPTDVISSINRRWLYQALEQTNQSNAAYELTDAIMRMQSMLMRNRDA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHH
LFREPIDADQLESSVDMIVGEATLIQTILASNPELQTKAIIDVADSGRSFANMANREASL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCHHHHHHCCCCCC
EARYVNSTNVYEDAYGALRSVRSNSETMLREESKHYQVLATTSFVMTLLLSLGLLFLLYY
EEEECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
TRNRYNHDLAHLKARALAIDPSLEPVETMFPKTHDFRGIEDELREIAASVHSTVHELENR
HHCCCCCHHHHHHHHHEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SQDLVRYHERWSSLFSETGLAIALMDDSYNLIERNEMFRQFFGDRNLYEINQLFTETGRR
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LFEQALEGVTDQGTSAQFIIHLKGEHLRYLNVKLTPLKREEKLTYYLIVEDETDRVERER
HHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEECCHHHHHHHH
KVDRLVRFDLATNLYNEYGFIRKWEKQEIDGAFVLIRIHDYHHLVDWYDPAYADLLMIEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHCCCHHHHHHHHHHH
ARAVESRLSKYAQHLFGRYRDDTFMLYVRGFSYEDEHELLELFPTEVTINHKRQNVHIQI
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCEEEEEE
GATETEGAYNDCLFKAMKALQHAKETRTPSVWYDSEILAQMQLAALIEQALPDAIRRGDL
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCE
TVAYQPQVELKTGRVVGAEVLARWTHPDIGVIPPNEFIRVAERSDQILWLSHNILDQTIA
EEEECCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHH
QLVAWQGTAFEDISLSFNLSAHSVDPSIVTKLRDSIEVYPWLPDRLKIELTESSDIMSYA
HHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCEECCCCCCCEEEEECCCHHHHHHH
SELERLEDIADLGYCLSIDDFGTGYASFEAIWHLPIQEVKIDRMYVSGKAKESTSFLRAV
HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCHHHHEEEHEEECCCCHHHHHHHHHH
SRFANEQQLTALAEGIETESDLSRMLREGVELGQGFYFSPALDAASFESWVNTKGHSR
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GQPRFAKIPYRTYTMALAVACLIGVLLFGLGTSFYWHEKQEAIDQTITNLNQAADLAGV
CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHH
EAYVTLFEAATRYEEQSNQTSSFLSTPYKERALQYNERLLNDFEDGVNERERETLETFSN
HHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELNQILETEQFEEVPTDVISSINRRWLYQALEQTNQSNAAYELTDAIMRMQSMLMRNRDA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHH
LFREPIDADQLESSVDMIVGEATLIQTILASNPELQTKAIIDVADSGRSFANMANREASL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCHHHHHHCCCCCC
EARYVNSTNVYEDAYGALRSVRSNSETMLREESKHYQVLATTSFVMTLLLSLGLLFLLYY
EEEECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
TRNRYNHDLAHLKARALAIDPSLEPVETMFPKTHDFRGIEDELREIAASVHSTVHELENR
HHCCCCCHHHHHHHHHEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SQDLVRYHERWSSLFSETGLAIALMDDSYNLIERNEMFRQFFGDRNLYEINQLFTETGRR
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LFEQALEGVTDQGTSAQFIIHLKGEHLRYLNVKLTPLKREEKLTYYLIVEDETDRVERER
HHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEECCHHHHHHHH
KVDRLVRFDLATNLYNEYGFIRKWEKQEIDGAFVLIRIHDYHHLVDWYDPAYADLLMIEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHCCCHHHHHHHHHHH
ARAVESRLSKYAQHLFGRYRDDTFMLYVRGFSYEDEHELLELFPTEVTINHKRQNVHIQI
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCEEEEEE
GATETEGAYNDCLFKAMKALQHAKETRTPSVWYDSEILAQMQLAALIEQALPDAIRRGDL
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCE
TVAYQPQVELKTGRVVGAEVLARWTHPDIGVIPPNEFIRVAERSDQILWLSHNILDQTIA
EEEECCCEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHH
QLVAWQGTAFEDISLSFNLSAHSVDPSIVTKLRDSIEVYPWLPDRLKIELTESSDIMSYA
HHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCEECCCCCCCEEEEECCCHHHHHHH
SELERLEDIADLGYCLSIDDFGTGYASFEAIWHLPIQEVKIDRMYVSGKAKESTSFLRAV
HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCHHHHEEEHEEECCCCHHHHHHHHHH
SRFANEQQLTALAEGIETESDLSRMLREGVELGQGFYFSPALDAASFESWVNTKGHSR
HHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]