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The map label for this gene is ydcM [C]

Identifier: 229916834

GI number: 229916834

Start: 1083866

End: 1084954

Strand: Reverse

Name: ydcM [C]

Synonym: EAT1b_1107

Alternate gene names: 229916834

Gene position: 1084954-1083866 (Counterclockwise)

Preceding gene: 229916835

Following gene: 229916833

Centisome position: 36.17

GC content: 56.75

Gene sequence:

>1089_bases
ATGCTGAAAGGCTACACATACAGGCTCCATCCGACGCCGGCACAGGCCGATTTCTTGGTCCGGACGATCGGCTGCACACG
CTTCATCTACAACAAGCTGCTCGAGGACCGGATCGCCATCCGCGAGGAGGCGAAGGCGGGGAGCGGAACGAGACGGAAAC
CGGCGACACCCGCCTCCTACAAGCCCCTCTTCCCGTTCCTCGCCGAGGCGGACAGCCTCGCGCTCGCGAACGCGAAGCTG
AACCTCGACACCGCGTTCGCGAAGTTCTTCGCCGGGACGGGCGGCTTCCCGGCCTTCAAATCGAGACGGCGGTCGCGCGC
CTCCTACACGACGAACAACCAGCACGGTACGATCCGTATCGAGGCGGGCAAGGTCCGTCTGCCGAAGGTCGGGTTCGTGC
GGTTCACACAACATCGCCCGTTCGAGGGCGTCATCCGGTCGGCGACGGTGTCGATGACGAGGACGGGCAAGTTCTTTGTC
TCCATCCTCGTCAAACAGGACGATGCACCATGGATTCCAGCCAAGAACAAGGTCGGGATCGATCTCGGTTTGGAGCACTT
CGCCGTCATGACGAACGACGAGATGGTCTCGGAGAAGATCGAAAACCCACGCTTTCTCCGAAAATCCGAAGCGAAGGTCA
AGAAGGCGCAACGGGCGCTGTCGCGAAAGAAAATCGGAAGCAAGAATCGTGAAAAAGCCAGGCTGATCCTCGCCAAGAGA
CACGAGAAAATCGCAAACCAACGCAAGGACTTCCTTCACAAACTGTCGAAACGGATCGTTGACGAGAACCAAGTCATCGT
CGTGGAGACATTGAAGTCAAAGGATATGATGAAGGATCACAAGGTAGCGAAGTCGATTGGAGATGTCAGCTGGTATGAGT
TCGTCCGGCAACTCGAATACAAATCAAACTTCTACGGACGGACGCTCATCAAGGCAGATCAATGGTACGCATCCACGCAA
ATCTGTTCTTCTTGCGGCGTAAAAGGCGAGAAGAAGACGATGGATGTTCGTGAATGGACGTGTGCCTGTGGCGCGCATCA
TGACCGTGACATCAACGCGAGCATCAACCTGTTGATGTTGGCTGACTGA

Upstream 100 bases:

>100_bases
ACGAACAAAAGTTCGTGATTCCGTCAGATTCGTCCTCCCCCTCCACGGGTATCGGACGAGGAGGATACATCACGATCTTC
TGGAGGGAGGAGGGACGGAC

Downstream 100 bases:

>100_bases
CAATCCTTCAGGGCAGGGACTGCCCGACGAGCTTGGTCCATAACCGTGGCTGGTAGGAGCACGGTCTTCCCAAGAAGCTC
CCCCTTCAATTTGCGAAGCA

Product: transposase, IS605 OrfB family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MLKGYTYRLHPTPAQADFLVRTIGCTRFIYNKLLEDRIAIREEAKAGSGTRRKPATPASYKPLFPFLAEADSLALANAKL
NLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRIEAGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTRTGKFFV
SILVKQDDAPWIPAKNKVGIDLGLEHFAVMTNDEMVSEKIENPRFLRKSEAKVKKAQRALSRKKIGSKNREKARLILAKR
HEKIANQRKDFLHKLSKRIVDENQVIVVETLKSKDMMKDHKVAKSIGDVSWYEFVRQLEYKSNFYGRTLIKADQWYASTQ
ICSSCGVKGEKKTMDVREWTCACGAHHDRDINASINLLMLAD

Sequences:

>Translated_362_residues
MLKGYTYRLHPTPAQADFLVRTIGCTRFIYNKLLEDRIAIREEAKAGSGTRRKPATPASYKPLFPFLAEADSLALANAKL
NLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRIEAGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTRTGKFFV
SILVKQDDAPWIPAKNKVGIDLGLEHFAVMTNDEMVSEKIENPRFLRKSEAKVKKAQRALSRKKIGSKNREKARLILAKR
HEKIANQRKDFLHKLSKRIVDENQVIVVETLKSKDMMKDHKVAKSIGDVSWYEFVRQLEYKSNFYGRTLIKADQWYASTQ
ICSSCGVKGEKKTMDVREWTCACGAHHDRDINASINLLMLAD
>Mature_362_residues
MLKGYTYRLHPTPAQADFLVRTIGCTRFIYNKLLEDRIAIREEAKAGSGTRRKPATPASYKPLFPFLAEADSLALANAKL
NLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRIEAGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTRTGKFFV
SILVKQDDAPWIPAKNKVGIDLGLEHFAVMTNDEMVSEKIENPRFLRKSEAKVKKAQRALSRKKIGSKNREKARLILAKR
HEKIANQRKDFLHKLSKRIVDENQVIVVETLKSKDMMKDHKVAKSIGDVSWYEFVRQLEYKSNFYGRTLIKADQWYASTQ
ICSSCGVKGEKKTMDVREWTCACGAHHDRDINASINLLMLAD

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=362, Percent_Identity=28.4530386740331, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41134; Mature: 41134

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGYTYRLHPTPAQADFLVRTIGCTRFIYNKLLEDRIAIREEAKAGSGTRRKPATPASY
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KPLFPFLAEADSLALANAKLNLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRI
CCCHHHHHCCCCEEEEECEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
EAGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTRTGKFFVSILVKQDDAPWIPAKNKVGI
EECEEECCCCCEEEEECCCCHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCCCCCCCE
DLGLEHFAVMTNDEMVSEKIENPRFLRKSEAKVKKAQRALSRKKIGSKNREKARLILAKR
EECHHHEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HEKIANQRKDFLHKLSKRIVDENQVIVVETLKSKDMMKDHKVAKSIGDVSWYEFVRQLEY
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
KSNFYGRTLIKADQWYASTQICSSCGVKGEKKTMDVREWTCACGAHHDRDINASINLLML
HCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEE
AD
EC
>Mature Secondary Structure
MLKGYTYRLHPTPAQADFLVRTIGCTRFIYNKLLEDRIAIREEAKAGSGTRRKPATPASY
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KPLFPFLAEADSLALANAKLNLDTAFAKFFAGTGGFPAFKSRRRSRASYTTNNQHGTIRI
CCCHHHHHCCCCEEEEECEECHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
EAGKVRLPKVGFVRFTQHRPFEGVIRSATVSMTRTGKFFVSILVKQDDAPWIPAKNKVGI
EECEEECCCCCEEEEECCCCHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCCCCCCCE
DLGLEHFAVMTNDEMVSEKIENPRFLRKSEAKVKKAQRALSRKKIGSKNREKARLILAKR
EECHHHEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HEKIANQRKDFLHKLSKRIVDENQVIVVETLKSKDMMKDHKVAKSIGDVSWYEFVRQLEY
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
KSNFYGRTLIKADQWYASTQICSSCGVKGEKKTMDVREWTCACGAHHDRDINASINLLML
HCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEE
AD
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]