| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is toxA [H]
Identifier: 229916762
GI number: 229916762
Start: 981350
End: 983107
Strand: Direct
Name: toxA [H]
Synonym: EAT1b_1035
Alternate gene names: 229916762
Gene position: 981350-983107 (Clockwise)
Preceding gene: 229916761
Following gene: 229916763
Centisome position: 32.71
GC content: 52.5
Gene sequence:
>1758_bases ATGACATGGAAAAGAAGGGTCGGCATCGGTCTGTTAATCGGTGCAGTGTGGACGAGTCCACAGTTCGCATCCGCTGAGGG TTCATTCCAAAAGACGGAGGATGGCATCGTCTATACGTCGAGTGACGGGACGGTACTGACGGGATGGCAAGAAATCGACG GCCATACATACTATCTGAATGAAGATGGCACCCTCCTCACAGGTTGGCAGGAAATCGAAGGGGCTACCTATTACTTTGAG ACAGACGGTCGACTCGTCACGGGTGCTTACGCGATTGACGGTACGACATACACGTTTGACGAGAACGGAAAGCTACTCAC CGGCTGGCAGGAACGGGACGGTCTCGTCTACTATTACGATGAGACCGGTCAACCCGTCACCGGATTCCAGACGATTGCCG GCAAGCGATATTACTTCAACGAGGATGGGGTCCGTCTCTCGGGATGGCAGCAGCTTGGTGACGCCAAGCATTATTTCTTC CCAGACGGCACCATCCGTACAGGGATGTATACGATTGACGGCAAGAAATATTATTTGATGGAGCAAGGGAAGATGGCGAC CGGATGGCAGACGATTGGCACACGTCGCTATTACTTCGGGGATGACGGGGTACGTCGCCAAGGACTCGCCCGGATTGGTG ACAAGATGTACGGTTTCCATCCCACTTACGGATACCGTCTCGAAGGACTCTATCGCATCAACAATCGACACTATTTGTTC GGAAAATACGGCGACCGCAAGTATGGGCTACAGCGAATCGATGGTGTCATGTATGGATTCCATCCGACGTACGGGTACCG ACTAGAAGGTGTCCATAAACTAAATGCACGCATCTATTCATTCGACTCATACGGACGACGCGAGTATGGGTTCCAAACGG TCGATGGGAAGAAGGTCGGATTCCACCCGACCTACGGATACCGCCTGCAAGGGAAATTCCGATTGGATGGGAAGACGTAT CATTTCCACTCGACGGGTGTCCCCGAGAAAGGATGGAAATATACGACCCAGTACGAGTATTACGCTCCCGCGTTGACGAA GAAGACGGATTGGCAAGCCATCGACGGCAAGTGGTATTACTTTGACACGTATGGAAAGATGTATCAAAACCGTCGTGTCG GCAATGCCTCGTTCGATGCGCGGGGCGCCTATTCTCAGGCACTGTCCATCTATAAGATGAGCGTCCCACTTTATCGTCAG TTCCCGATGGGCTATCCGTCCGGCTGCGAGTTCTTCTCCCTCAAGATGGCGCTTGAAGAGAAAGGTCGTGCCGTCAGCGC CTCGACCTTATATAACGAGATGCCGAAGAGCATGTGGAACGCACGTTATGAGAACCGTCTCTATCGCTGGGTTGACCCGA ACGTCATGTTCACGGGAGATCCGAAAGGGACGCTCGGCAAGTATAAGAACTACGGGATTTACCCGAAAGGCATGATCGGA TTTGCCAGCAAGTATCGTCCGGTGAAAGACTTGTCCAACCAAGGCCTCGGCTCGATTGAGCGTGAACTGTCGATGGGTAA CCCGGTCATCGTCTGGGCGAGCGTCGACTTCAACAAACCGTACGGCTACTTCAACTGGTACACCGCTTCGAACAAGAAGT TCACCGGCTACGTCAACTATCACGTCATGTTAGCGACCGGATATGACAAATCAAACTTGTATATCAACGACCCATATCGT GGACGCTTGGTCATCCCGAAATCAAAAGTGAGCGCCGTCATGAGCGCGACAGGATGGAAAGCGCTCGCGGTCAGATAA
Upstream 100 bases:
>100_bases CGGCGTAAACGTCTGACCTTACAAATGATTCATTTGCCACAGCTTCATCTTGGATAAATATGGGTATCTCTTCTGTATGC ATACAGAGGAGGTCACATGA
Downstream 100 bases:
>100_bases GTAAGAAGGAACGTGTCTTTCATCGAAGGGCACGTTTTTTGTGTGCGATTAGGAGAATAGTACGAAATGCAGAAATATAA ATTCCTATTTTTATGATTAA
Product: cell wall binding repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 585; Mature: 584
Protein sequence:
>585_residues MTWKRRVGIGLLIGAVWTSPQFASAEGSFQKTEDGIVYTSSDGTVLTGWQEIDGHTYYLNEDGTLLTGWQEIEGATYYFE TDGRLVTGAYAIDGTTYTFDENGKLLTGWQERDGLVYYYDETGQPVTGFQTIAGKRYYFNEDGVRLSGWQQLGDAKHYFF PDGTIRTGMYTIDGKKYYLMEQGKMATGWQTIGTRRYYFGDDGVRRQGLARIGDKMYGFHPTYGYRLEGLYRINNRHYLF GKYGDRKYGLQRIDGVMYGFHPTYGYRLEGVHKLNARIYSFDSYGRREYGFQTVDGKKVGFHPTYGYRLQGKFRLDGKTY HFHSTGVPEKGWKYTTQYEYYAPALTKKTDWQAIDGKWYYFDTYGKMYQNRRVGNASFDARGAYSQALSIYKMSVPLYRQ FPMGYPSGCEFFSLKMALEEKGRAVSASTLYNEMPKSMWNARYENRLYRWVDPNVMFTGDPKGTLGKYKNYGIYPKGMIG FASKYRPVKDLSNQGLGSIERELSMGNPVIVWASVDFNKPYGYFNWYTASNKKFTGYVNYHVMLATGYDKSNLYINDPYR GRLVIPKSKVSAVMSATGWKALAVR
Sequences:
>Translated_585_residues MTWKRRVGIGLLIGAVWTSPQFASAEGSFQKTEDGIVYTSSDGTVLTGWQEIDGHTYYLNEDGTLLTGWQEIEGATYYFE TDGRLVTGAYAIDGTTYTFDENGKLLTGWQERDGLVYYYDETGQPVTGFQTIAGKRYYFNEDGVRLSGWQQLGDAKHYFF PDGTIRTGMYTIDGKKYYLMEQGKMATGWQTIGTRRYYFGDDGVRRQGLARIGDKMYGFHPTYGYRLEGLYRINNRHYLF GKYGDRKYGLQRIDGVMYGFHPTYGYRLEGVHKLNARIYSFDSYGRREYGFQTVDGKKVGFHPTYGYRLQGKFRLDGKTY HFHSTGVPEKGWKYTTQYEYYAPALTKKTDWQAIDGKWYYFDTYGKMYQNRRVGNASFDARGAYSQALSIYKMSVPLYRQ FPMGYPSGCEFFSLKMALEEKGRAVSASTLYNEMPKSMWNARYENRLYRWVDPNVMFTGDPKGTLGKYKNYGIYPKGMIG FASKYRPVKDLSNQGLGSIERELSMGNPVIVWASVDFNKPYGYFNWYTASNKKFTGYVNYHVMLATGYDKSNLYINDPYR GRLVIPKSKVSAVMSATGWKALAVR >Mature_584_residues TWKRRVGIGLLIGAVWTSPQFASAEGSFQKTEDGIVYTSSDGTVLTGWQEIDGHTYYLNEDGTLLTGWQEIEGATYYFET DGRLVTGAYAIDGTTYTFDENGKLLTGWQERDGLVYYYDETGQPVTGFQTIAGKRYYFNEDGVRLSGWQQLGDAKHYFFP DGTIRTGMYTIDGKKYYLMEQGKMATGWQTIGTRRYYFGDDGVRRQGLARIGDKMYGFHPTYGYRLEGLYRINNRHYLFG KYGDRKYGLQRIDGVMYGFHPTYGYRLEGVHKLNARIYSFDSYGRREYGFQTVDGKKVGFHPTYGYRLQGKFRLDGKTYH FHSTGVPEKGWKYTTQYEYYAPALTKKTDWQAIDGKWYYFDTYGKMYQNRRVGNASFDARGAYSQALSIYKMSVPLYRQF PMGYPSGCEFFSLKMALEEKGRAVSASTLYNEMPKSMWNARYENRLYRWVDPNVMFTGDPKGTLGKYKNYGIYPKGMIGF ASKYRPVKDLSNQGLGSIERELSMGNPVIVWASVDFNKPYGYFNWYTASNKKFTGYVNYHVMLATGYDKSNLYINDPYRG RLVIPKSKVSAVMSATGWKALAVR
Specific function: Only after the enteral delivery of the enterotoxin A may the characteristic disease called pseudomembranous colitis be induced [H]
COG id: COG5263
COG function: function code R; FOG: Glucan-binding domain (YG repeat)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 32 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018337 - InterPro: IPR007577 - InterPro: IPR020974 [H]
Pfam domain/function: PF01473 CW_binding_1; PF04488 Gly_transf_sug; PF11713 Peptidase_C80 [H]
EC number: NA
Molecular weight: Translated: 67396; Mature: 67264
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTWKRRVGIGLLIGAVWTSPQFASAEGSFQKTEDGIVYTSSDGTVLTGWQEIDGHTYYLN CCCCHHCCEEEEEEEEECCCCCCCCCCCCEECCCCEEEECCCCEEEEEEEECCCEEEEEC EDGTLLTGWQEIEGATYYFETDGRLVTGAYAIDGTTYTFDENGKLLTGWQERDGLVYYYD CCCCEEECHHHHCCEEEEEECCCEEEEEEEEECCEEEEECCCCCEEECEECCCCEEEEEC ETGQPVTGFQTIAGKRYYFNEDGVRLSGWQQLGDAKHYFFPDGTIRTGMYTIDGKKYYLM CCCCCCCCCHHHCCCEEEECCCCEEEECHHHCCCCCEEECCCCCEEEEEEEECCCEEEEE EQGKMATGWQTIGTRRYYFGDDGVRRQGLARIGDKMYGFHPTYGYRLEGLYRINNRHYLF ECCCCCCCEEECCCEEEEECCCCHHHHHHHHHCHHHCCCCCCCCEEEEEEEEECCEEEEE GKYGDRKYGLQRIDGVMYGFHPTYGYRLEGVHKLNARIYSFDSYGRREYGFQTVDGKKVG ECCCCCHHCHHHHCCEEEECCCCCCEEECCEEEECEEEEEECCCCCHHCCEEECCCCEEC FHPTYGYRLQGKFRLDGKTYHFHSTGVPEKGWKYTTQYEYYAPALTKKTDWQAIDGKWYY CCCCCCEEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCEEECCEEEE FDTYGKMYQNRRVGNASFDARGAYSQALSIYKMSVPLYRQFPMGYPSGCEFFSLKMALEE EECHHHHHHCCCCCCCCCCCCCCHHHEEEEEEECCCHHHHCCCCCCCCCCEEEEEEEHHH KGRAVSASTLYNEMPKSMWNARYENRLYRWVDPNVMFTGDPKGTLGKYKNYGIYPKGMIG CCCEEEHHHHHHHHHHHHHCCHHHCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHH FASKYRPVKDLSNQGLGSIERELSMGNPVIVWASVDFNKPYGYFNWYTASNKKFTGYVNY HHHCCCCHHHHCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEEE HVMLATGYDKSNLYINDPYRGRLVIPKSKVSAVMSATGWKALAVR EEEEEECCCCCCEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEEC >Mature Secondary Structure TWKRRVGIGLLIGAVWTSPQFASAEGSFQKTEDGIVYTSSDGTVLTGWQEIDGHTYYLN CCCHHCCEEEEEEEEECCCCCCCCCCCCEECCCCEEEECCCCEEEEEEEECCCEEEEEC EDGTLLTGWQEIEGATYYFETDGRLVTGAYAIDGTTYTFDENGKLLTGWQERDGLVYYYD CCCCEEECHHHHCCEEEEEECCCEEEEEEEEECCEEEEECCCCCEEECEECCCCEEEEEC ETGQPVTGFQTIAGKRYYFNEDGVRLSGWQQLGDAKHYFFPDGTIRTGMYTIDGKKYYLM CCCCCCCCCHHHCCCEEEECCCCEEEECHHHCCCCCEEECCCCCEEEEEEEECCCEEEEE EQGKMATGWQTIGTRRYYFGDDGVRRQGLARIGDKMYGFHPTYGYRLEGLYRINNRHYLF ECCCCCCCEEECCCEEEEECCCCHHHHHHHHHCHHHCCCCCCCCEEEEEEEEECCEEEEE GKYGDRKYGLQRIDGVMYGFHPTYGYRLEGVHKLNARIYSFDSYGRREYGFQTVDGKKVG ECCCCCHHCHHHHCCEEEECCCCCCEEECCEEEECEEEEEECCCCCHHCCEEECCCCEEC FHPTYGYRLQGKFRLDGKTYHFHSTGVPEKGWKYTTQYEYYAPALTKKTDWQAIDGKWYY CCCCCCEEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCEEECCEEEE FDTYGKMYQNRRVGNASFDARGAYSQALSIYKMSVPLYRQFPMGYPSGCEFFSLKMALEE EECHHHHHHCCCCCCCCCCCCCCHHHEEEEEEECCCHHHHCCCCCCCCCCEEEEEEEHHH KGRAVSASTLYNEMPKSMWNARYENRLYRWVDPNVMFTGDPKGTLGKYKNYGIYPKGMIG CCCEEEHHHHHHHHHHHHHCCHHHCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHH FASKYRPVKDLSNQGLGSIERELSMGNPVIVWASVDFNKPYGYFNWYTASNKKFTGYVNY HHHCCCCHHHHCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEEEE HVMLATGYDKSNLYINDPYRGRLVIPKSKVSAVMSATGWKALAVR EEEEEECCCCCCEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2109310; 2105276 [H]