Click here to switch to the map view.

The map label for this gene is csrA

Identifier: 229916656

GI number: 229916656

Start: 879058

End: 879285

Strand: Reverse

Name: csrA

Synonym: EAT1b_0928

Alternate gene names: 229916656

Gene position: 879285-879058 (Counterclockwise)

Preceding gene: 229916657

Following gene: 229916655

Centisome position: 29.31

GC content: 50.44

Gene sequence:

>228_bases
ATGCTCGTATTGAAACGAAAACAAGGTGAGGCCATCCATATCGGCGACGACGTGACGCTTACGGTGCTCGCCATCGAAGG
CGACCAGGTGAAGCTCGGAATCGATGCCCCGCGTCATATCGATATCCACCGTCATGAAGTATATATTCAAATGCAGGAAG
AGAATGAGTCGGCACGAAATAGCGCCAACTTGATGAAGCAGATGATTCAGAAGCAGTCGGAAGCGTGA

Upstream 100 bases:

>100_bases
TCGTCATCGAGACGAAGGAACGTCGTGGGAAACAAGTCATCCTAGACGATGCGTATCCGGCCCGTTATCCGCTCGGCGGC
ACGAAAGCGGAGGTGCGCTG

Downstream 100 bases:

>100_bases
GCTTTCGACTTTTTTCATCATTATGGCACTTGAGGGTGACATTTCTCACCGAGTTGGGATAGGATGGAAACGGAAAGGGA
GGGAGGAGAATCCGTGGGAA

Product: carbon storage regulator, CsrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MLVLKRKQGEAIHIGDDVTLTVLAIEGDQVKLGIDAPRHIDIHRHEVYIQMQEENESARNSANLMKQMIQKQSEA

Sequences:

>Translated_75_residues
MLVLKRKQGEAIHIGDDVTLTVLAIEGDQVKLGIDAPRHIDIHRHEVYIQMQEENESARNSANLMKQMIQKQSEA
>Mature_75_residues
MLVLKRKQGEAIHIGDDVTLTVLAIEGDQVKLGIDAPRHIDIHRHEVYIQMQEENESARNSANLMKQMIQKQSEA

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=54, Percent_Identity=48.1481481481481, Blast_Score=69, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_EXISA (C4L5P2)

Other databases:

- EMBL:   CP001615
- RefSeq:   YP_002885302.1
- GeneID:   7869333
- GenomeReviews:   CP001615_GR
- KEGG:   eat:EAT1b_0928
- OMA:   RIGINAP
- ProtClustDB:   CLSK2489847
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8534; Mature: 8534

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLKRKQGEAIHIGDDVTLTVLAIEGDQVKLGIDAPRHIDIHRHEVYIQMQEENESARN
CEEEECCCCCEEEECCCCEEEEEEECCCEEEEECCCCCEEEEEEEEEEEEEECCCCCCCH
SANLMKQMIQKQSEA
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVLKRKQGEAIHIGDDVTLTVLAIEGDQVKLGIDAPRHIDIHRHEVYIQMQEENESARN
CEEEECCCCCEEEECCCCEEEEEEECCCEEEEECCCCCEEEEEEEEEEEEEECCCCCCCH
SANLMKQMIQKQSEA
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA