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The map label for this gene is cspC [H]

Identifier: 229916626

GI number: 229916626

Start: 854873

End: 855070

Strand: Reverse

Name: cspC [H]

Synonym: EAT1b_0898

Alternate gene names: 229916626

Gene position: 855070-854873 (Counterclockwise)

Preceding gene: 229916635

Following gene: 229916625

Centisome position: 28.5

GC content: 41.41

Gene sequence:

>198_bases
ATGGTAGGTAAAGTAAAATGGTTTAACTCAGAAAAAGGTTTTGGATTCATCGAAGTTGAAGGCGGCAAAGACGTGTTCGT
ACACTTCTCAGCAATCCAATCTGAAGGCTACAAATCACTTGACGAAGGTCAAGATGTAGAGTTTGAAATCGTTGATGGCG
AGCGTGGCCCACAAGCGGCTAACGTTGTAAAATTATAA

Upstream 100 bases:

>100_bases
TATTTGAGAAAGTATTTGTCACGCTTACAAGAAGGTGGTAAGATTAGGCGTAGAGGACAACCCTCTGTATTCTCCAATGG
TGAAAGGAATGGATTTACAC

Downstream 100 bases:

>100_bases
TTTCAAACCGTGAAGCCGGCTCCCTTGTGAGTCGGCTTTTTATTTTGTCTACATAATAAAAAAAGGCGTTTAAAAATGAG
TGGAATGGGTATTTTCTTTC

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MVGKVKWFNSEKGFGFIEVEGGKDVFVHFSAIQSEGYKSLDEGQDVEFEIVDGERGPQAANVVKL

Sequences:

>Translated_65_residues
MVGKVKWFNSEKGFGFIEVEGGKDVFVHFSAIQSEGYKSLDEGQDVEFEIVDGERGPQAANVVKL
>Mature_65_residues
MVGKVKWFNSEKGFGFIEVEGGKDVFVHFSAIQSEGYKSLDEGQDVEFEIVDGERGPQAANVVKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=68.75, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=66.6666666666667, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=63.6363636363636, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=65.625, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=64.0625, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=63.6363636363636, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=50, Blast_Score=70, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24658520, Length=62, Percent_Identity=50, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7180; Mature: 7180

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGKVKWFNSEKGFGFIEVEGGKDVFVHFSAIQSEGYKSLDEGQDVEFEIVDGERGPQAA
CCCCEEEECCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCC
NVVKL
EEEEC
>Mature Secondary Structure
MVGKVKWFNSEKGFGFIEVEGGKDVFVHFSAIQSEGYKSLDEGQDVEFEIVDGERGPQAA
CCCCEEEECCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCC
NVVKL
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]