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The map label for this gene is yvyD [H]

Identifier: 229916625

GI number: 229916625

Start: 854002

End: 854565

Strand: Reverse

Name: yvyD [H]

Synonym: EAT1b_0897

Alternate gene names: 229916625

Gene position: 854565-854002 (Counterclockwise)

Preceding gene: 229916626

Following gene: 229916624

Centisome position: 28.49

GC content: 48.4

Gene sequence:

>564_bases
ATGATTTATAACATTCGCGGCGAAAACATTGAGGTCACACCAGCAATCAAAGACTATGTCGAGAAAAAGCTGGAGAAGTT
GACTCGGTATTTCACAACTCCTACGGATGCACAGACGGCTTACGTCAACTTGAAAGTGTATAACGAGAAACAAAAAGTGG
AAGTGACGATCCCGATGCCGAACTTGTTGCTCCGTGCTGAGGACATCAACCTCGACATGTATGCGGCAATCGACCTCGTC
GTCGATAAATTGGAACGTCAAATCCGTAAACACAAAACGAAACTCAACCGTAAAGGACGCGGGAAAGAAGGTGGCGTCGG
CGAGTACTTCAAGTCTTTAGAAGGACCTGATGATACACCGGCCGTCTACGATGAGGACGAGGCAGAACTCGAACTCGTGC
GGACGAAACGCTTCACGTTGAAACCGATGGACACGGAAGAGGCGATTCTTCAAATGGATATGCTCGGTCACAGCTTCTTC
GTCTTCTCTGACGCAGAAACGGGCAACACGAACGTCGTCTACCGTCGTAAAGATGGGAAGTACGGCTTGATCGAACCTGA
ATAA

Upstream 100 bases:

>100_bases
GCCACCTGGTTCCCCTTTCTTTTTTAAGAAATGAAGCAGGAGATTCCGTCTCGTTCGACGAATCATTGGTTCAAGCGGTT
ATTTCTAAGGAGGAGTTCAG

Downstream 100 bases:

>100_bases
TATACATGACACTACACGACCTCCCGGCTTCGGGGGGTCGTTTCCTTTTGCCTTTCCTTGAAAGGTGGCACCACTTCGGT
TAAACTGTACATTAGGGAAA

Product: sigma 54 modulation protein/ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MIYNIRGENIEVTPAIKDYVEKKLEKLTRYFTTPTDAQTAYVNLKVYNEKQKVEVTIPMPNLLLRAEDINLDMYAAIDLV
VDKLERQIRKHKTKLNRKGRGKEGGVGEYFKSLEGPDDTPAVYDEDEAELELVRTKRFTLKPMDTEEAILQMDMLGHSFF
VFSDAETGNTNVVYRRKDGKYGLIEPE

Sequences:

>Translated_187_residues
MIYNIRGENIEVTPAIKDYVEKKLEKLTRYFTTPTDAQTAYVNLKVYNEKQKVEVTIPMPNLLLRAEDINLDMYAAIDLV
VDKLERQIRKHKTKLNRKGRGKEGGVGEYFKSLEGPDDTPAVYDEDEAELELVRTKRFTLKPMDTEEAILQMDMLGHSFF
VFSDAETGNTNVVYRRKDGKYGLIEPE
>Mature_187_residues
MIYNIRGENIEVTPAIKDYVEKKLEKLTRYFTTPTDAQTAYVNLKVYNEKQKVEVTIPMPNLLLRAEDINLDMYAAIDLV
VDKLERQIRKHKTKLNRKGRGKEGGVGEYFKSLEGPDDTPAVYDEDEAELELVRTKRFTLKPMDTEEAILQMDMLGHSFF
VFSDAETGNTNVVYRRKDGKYGLIEPE

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=97, Percent_Identity=39.1752577319588, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21588; Mature: 21588

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYNIRGENIEVTPAIKDYVEKKLEKLTRYFTTPTDAQTAYVNLKVYNEKQKVEVTIPMP
CEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEECCC
NLLLRAEDINLDMYAAIDLVVDKLERQIRKHKTKLNRKGRGKEGGVGEYFKSLEGPDDTP
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCC
AVYDEDEAELELVRTKRFTLKPMDTEEAILQMDMLGHSFFVFSDAETGNTNVVYRRKDGK
CCCCCCCHHEEEEEECCEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCC
YGLIEPE
CCCCCCC
>Mature Secondary Structure
MIYNIRGENIEVTPAIKDYVEKKLEKLTRYFTTPTDAQTAYVNLKVYNEKQKVEVTIPMP
CEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEECCC
NLLLRAEDINLDMYAAIDLVVDKLERQIRKHKTKLNRKGRGKEGGVGEYFKSLEGPDDTP
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCC
AVYDEDEAELELVRTKRFTLKPMDTEEAILQMDMLGHSFFVFSDAETGNTNVVYRRKDGK
CCCCCCCHHEEEEEECCEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCC
YGLIEPE
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]