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The map label for this gene is sodA [H]

Identifier: 229916297

GI number: 229916297

Start: 514246

End: 514854

Strand: Reverse

Name: sodA [H]

Synonym: EAT1b_0566

Alternate gene names: 229916297

Gene position: 514854-514246 (Counterclockwise)

Preceding gene: 229916298

Following gene: 229916296

Centisome position: 17.16

GC content: 46.63

Gene sequence:

>609_bases
ATGGCTAAATTTGAATTACCACAACTTGATTACGCATATGATGCACTCGAACCACACATTGATGCACGCACGATGGAAAT
CCACCACACGAAACACCACAACACATACGTCACGAACGTAAACAATGCACTCGAAGGAAAAGATGTGGAGTACTCTTCAC
TCGAAGACTTGCTTCAAAAAATCGATTCGCTTCCTGCTGACATTCAAACAGCTGTCCGCAACAACGGTGGCGGTCATTGG
AACCACTCGTTCTTCTGGAAGCTCTTGAAGAAAAATGAGAACGGTACACCGTCTGGCGACCTCGCTGCTGCAATCGATGA
GTCGTTCGGTAGCTTCGATGGGTTTAAAGACGAATTCACGAAAGCTGCAACAACTCGCTTCGGTTCAGGCTGGGCTTGGC
TCGTTGTGAAAAATGGTAAACTCGAAGTCACGTCTACTCCAAACCAAGACTCACCGATCATGGAAGGTGTTACACCGATC
CTCGGTCTTGATGTGTGGGAGCATGCTTACTACTTGAACTACCAAAACCGTCGTCCTGACTATATCAACGCATTCTTCCA
TGTCATCGATTGGGATTATGTGGCGACATTGTACGCTGACGCAAAATAA

Upstream 100 bases:

>100_bases
AGAAGATGTCGAATAAAGCATTACAATTGAGTCGACCGTCACATATCTGTTACATTTAAGACGAACGTTGTTCAAAACAC
TTTTAAGGGGGATTTTAGTA

Downstream 100 bases:

>100_bases
GTTTGTCTTACCCGAGGTTCTGATATGAATCTCGGGTTTTTTTATGGTTTTCATTAATTTGTAAACAAATTATGATATAG
TGAAAATCGGACAAAACGAC

Product: Superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAKFELPQLDYAYDALEPHIDARTMEIHHTKHHNTYVTNVNNALEGKDVEYSSLEDLLQKIDSLPADIQTAVRNNGGGHW
NHSFFWKLLKKNENGTPSGDLAAAIDESFGSFDGFKDEFTKAATTRFGSGWAWLVVKNGKLEVTSTPNQDSPIMEGVTPI
LGLDVWEHAYYLNYQNRRPDYINAFFHVIDWDYVATLYADAK

Sequences:

>Translated_202_residues
MAKFELPQLDYAYDALEPHIDARTMEIHHTKHHNTYVTNVNNALEGKDVEYSSLEDLLQKIDSLPADIQTAVRNNGGGHW
NHSFFWKLLKKNENGTPSGDLAAAIDESFGSFDGFKDEFTKAATTRFGSGWAWLVVKNGKLEVTSTPNQDSPIMEGVTPI
LGLDVWEHAYYLNYQNRRPDYINAFFHVIDWDYVATLYADAK
>Mature_201_residues
AKFELPQLDYAYDALEPHIDARTMEIHHTKHHNTYVTNVNNALEGKDVEYSSLEDLLQKIDSLPADIQTAVRNNGGGHWN
HSFFWKLLKKNENGTPSGDLAAAIDESFGSFDGFKDEFTKAATTRFGSGWAWLVVKNGKLEVTSTPNQDSPIMEGVTPIL
GLDVWEHAYYLNYQNRRPDYINAFFHVIDWDYVATLYADAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=204, Percent_Identity=47.0588235294118, Blast_Score=182, Evalue=1e-46,
Organism=Homo sapiens, GI67782305, Length=204, Percent_Identity=47.0588235294118, Blast_Score=182, Evalue=1e-46,
Organism=Homo sapiens, GI67782309, Length=204, Percent_Identity=37.7450980392157, Blast_Score=137, Evalue=7e-33,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=60.8695652173913, Blast_Score=246, Evalue=6e-67,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=48.4536082474227, Blast_Score=196, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17506561, Length=205, Percent_Identity=42.4390243902439, Blast_Score=157, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=40.8866995073892, Blast_Score=154, Evalue=3e-38,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=42.2330097087379, Blast_Score=145, Evalue=5e-36,
Organism=Drosophila melanogaster, GI17136812, Length=205, Percent_Identity=44.390243902439, Blast_Score=165, Evalue=2e-41,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22946; Mature: 22814

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKFELPQLDYAYDALEPHIDARTMEIHHTKHHNTYVTNVNNALEGKDVEYSSLEDLLQK
CCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
IDSLPADIQTAVRNNGGGHWNHSFFWKLLKKNENGTPSGDLAAAIDESFGSFDGFKDEFT
HHCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHH
KAATTRFGSGWAWLVVKNGKLEVTSTPNQDSPIMEGVTPILGLDVWEHAYYLNYQNRRPD
HHHHHCCCCCEEEEEEECCEEEEECCCCCCCCHHHCCHHHHHHHHHHHEEEEECCCCCCH
YINAFFHVIDWDYVATLYADAK
HHHHHHHHHHHHHHEEEEECCC
>Mature Secondary Structure 
AKFELPQLDYAYDALEPHIDARTMEIHHTKHHNTYVTNVNNALEGKDVEYSSLEDLLQK
CCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
IDSLPADIQTAVRNNGGGHWNHSFFWKLLKKNENGTPSGDLAAAIDESFGSFDGFKDEFT
HHCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHH
KAATTRFGSGWAWLVVKNGKLEVTSTPNQDSPIMEGVTPILGLDVWEHAYYLNYQNRRPD
HHHHHCCCCCEEEEEEECCEEEEECCCCCCCCHHHCCHHHHHHHHHHHEEEEECCCCCCH
YINAFFHVIDWDYVATLYADAK
HHHHHHHHHHHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]