BacMap

Definition	Exiguobacterium sp. AT1b, complete genome.
Accession	NC_012673
Length	2,999,895

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The map label for this gene is yqjQ [H]

Identifier: 229916199

GI number: 229916199

Start: 426154

End: 426897

Strand: Reverse

Name: yqjQ [H]

Synonym: EAT1b_0468

Alternate gene names: 229916199

Gene position: 426897-426154 (Counterclockwise)

Preceding gene: 229916200

Following gene: 229916198

Centisome position: 14.23

GC content: 50.94

Gene sequence:

>744_bases
GTGAAACGGGTAGTCATTACTGGTGCGTCAAGCGGGCTCGGTGCCGCATTGGCGCATTCTTTTTATGAACATGGATACAA
CGTATTATTGATTGGAAGAAATGAAGAACGGTTAAAAAAGATTGCCGCAACATGTGAAGGAGACTGGATGTGCGCGGATG
TCGCGAAGTCAACCGCTCTCGTATACGATGTGACCGAGCGGTTCGGGAAATTTGACGTATGGGTCAACAATGCAGGCATG
GCCGAATTTGATTTGGTGACCGATCAGTCGACGGAAGTGATGGAGGAAACGATGCGTGTGAACGCGGTCGCGCCGATGCT
GTTATCGCGAGATGTCGCCCGCGTGCTGGAGCCCGAGGGCGTCATCGTCAACATATGTTCACAGGCGGCAAAAGTACCGA
CACCGAAGTCAGCCGTCTACGCAGGGTCGAAGGCGGCGCTATTGCAGTTCTCAAACGCGCTTAGACTAGAGTTAAAGCCC
CGTGGCATTCACGTCATGACGGTCAATCCTGGACCGATTGCGACACCGTTCTTTGATCGAGCTGATAAAAGTGGTACATA
TGCTGAAAGTGTTCAAAGGATCATGCTTGACCCGAAACGGTTGGCCGATGCGATTGTCAGAGGAAGTCGTAAGCGAAAAC
GTGAAATCAATGCGCCGTGGTGGATGAATGTAGGTGCGAATGTGTACGCAATCTGCCCAACCATGTTCGAAAAGCTCGCA
AAACGGGGATTTGAGAAAAAGTAA

Upstream 100 bases:

>100_bases
GTGAAGTGTTTGCACGACTCAGTTTACTCGAGGAACGTGGCGACATCGAGAGACGTCGAGATGATCAAAAATGGATTTAT
ACGAAGAAAGAAGTGATGTC

Downstream 100 bases:

>100_bases
ATAAAGGGGGAGAACGATGAAAAAATGGAGAGTACTGCTCGCAACTGTCATGCTCACATTCGTGGCAGCATGTGGGAGTG
AACAGGCAGTTGAGTTTTCG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKRVVITGASSGLGAALAHSFYEHGYNVLLIGRNEERLKKIAATCEGDWMCADVAKSTALVYDVTERFGKFDVWVNNAGM
AEFDLVTDQSTEVMEETMRVNAVAPMLLSRDVARVLEPEGVIVNICSQAAKVPTPKSAVYAGSKAALLQFSNALRLELKP
RGIHVMTVNPGPIATPFFDRADKSGTYAESVQRIMLDPKRLADAIVRGSRKRKREINAPWWMNVGANVYAICPTMFEKLA
KRGFEKK

Sequences:

>Translated_247_residues
MKRVVITGASSGLGAALAHSFYEHGYNVLLIGRNEERLKKIAATCEGDWMCADVAKSTALVYDVTERFGKFDVWVNNAGM
AEFDLVTDQSTEVMEETMRVNAVAPMLLSRDVARVLEPEGVIVNICSQAAKVPTPKSAVYAGSKAALLQFSNALRLELKP
RGIHVMTVNPGPIATPFFDRADKSGTYAESVQRIMLDPKRLADAIVRGSRKRKREINAPWWMNVGANVYAICPTMFEKLA
KRGFEKK
>Mature_247_residues
MKRVVITGASSGLGAALAHSFYEHGYNVLLIGRNEERLKKIAATCEGDWMCADVAKSTALVYDVTERFGKFDVWVNNAGM
AEFDLVTDQSTEVMEETMRVNAVAPMLLSRDVARVLEPEGVIVNICSQAAKVPTPKSAVYAGSKAALLQFSNALRLELKP
RGIHVMTVNPGPIATPFFDRADKSGTYAESVQRIMLDPKRLADAIVRGSRKRKREINAPWWMNVGANVYAICPTMFEKLA
KRGFEKK

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=188, Percent_Identity=32.9787234042553, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=30.0518134715026, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7705925, Length=182, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI32483357, Length=187, Percent_Identity=30.4812834224599, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI226371731, Length=183, Percent_Identity=34.4262295081967, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503817, Length=223, Percent_Identity=29.1479820627803, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI109715829, Length=223, Percent_Identity=25.1121076233184, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI40254992, Length=181, Percent_Identity=31.4917127071823, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI126723191, Length=175, Percent_Identity=29.7142857142857, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031737, Length=183, Percent_Identity=30.6010928961749, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI33667109, Length=183, Percent_Identity=30.6010928961749, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI157739938, Length=243, Percent_Identity=26.7489711934156, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI4758504, Length=235, Percent_Identity=31.063829787234, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7705855, Length=186, Percent_Identity=26.8817204301075, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI4504503, Length=209, Percent_Identity=28.2296650717703, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI4557649, Length=184, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI38424085, Length=230, Percent_Identity=27.8260869565217, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI2367365, Length=176, Percent_Identity=31.8181818181818, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87082160, Length=205, Percent_Identity=30.2439024390244, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786701, Length=234, Percent_Identity=30.3418803418803, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082100, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787820, Length=217, Percent_Identity=27.6497695852535, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787335, Length=183, Percent_Identity=30.0546448087432, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1789057, Length=212, Percent_Identity=25, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789378, Length=187, Percent_Identity=27.807486631016, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787526, Length=186, Percent_Identity=26.3440860215054, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=185, Percent_Identity=28.6486486486486, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=249, Percent_Identity=31.3253012048193, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=207, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17570069, Length=255, Percent_Identity=31.3725490196078, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=192, Percent_Identity=34.8958333333333, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=195, Percent_Identity=34.3589743589744, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=34.3589743589744, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=213, Percent_Identity=31.924882629108, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=210, Percent_Identity=30.4761904761905, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=34.020618556701, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17538480, Length=195, Percent_Identity=32.3076923076923, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=193, Percent_Identity=33.160621761658, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=193, Percent_Identity=32.6424870466321, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=31.6326530612245, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=30.1507537688442, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=193, Percent_Identity=32.1243523316062, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=193, Percent_Identity=31.6062176165803, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=197, Percent_Identity=32.48730964467, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=210, Percent_Identity=30.4761904761905, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=213, Percent_Identity=29.5774647887324, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=182, Percent_Identity=31.3186813186813, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=195, Percent_Identity=29.2307692307692, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=29.8969072164948, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=28.6458333333333, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=187, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=192, Percent_Identity=29.6875, Blast_Score=75, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=193, Percent_Identity=30.0518134715026, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI23397609, Length=179, Percent_Identity=36.8715083798883, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24644339, Length=208, Percent_Identity=35.0961538461538, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28571526, Length=207, Percent_Identity=32.3671497584541, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21358495, Length=268, Percent_Identity=28.7313432835821, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357041, Length=190, Percent_Identity=31.0526315789474, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI28574402, Length=202, Percent_Identity=32.1782178217822, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24584744, Length=202, Percent_Identity=32.1782178217822, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24580925, Length=196, Percent_Identity=33.6734693877551, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24584752, Length=183, Percent_Identity=32.7868852459016, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=29.1666666666667, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356301, Length=246, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27256; Mature: 27256

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVVITGASSGLGAALAHSFYEHGYNVLLIGRNEERLKKIAATCEGDWMCADVAKSTAL
CCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEHHHHHHHHH
VYDVTERFGKFDVWVNNAGMAEFDLVTDQSTEVMEETMRVNAVAPMLLSRDVARVLEPEG
EEEHHHHCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VIVNICSQAAKVPTPKSAVYAGSKAALLQFSNALRLELKPRGIHVMTVNPGPIATPFFDR
CEEEEHHHHHCCCCCCHHEECCCHHHEEECCCCEEEEEECCCEEEEEECCCCCCCCCHHC
ADKSGTYAESVQRIMLDPKRLADAIVRGSRKRKREINAPWWMNVGANVYAICPTMFEKLA
CCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCEEEECCCCEEEECHHHHHHHH
KRGFEKK
HCCCCCC
>Mature Secondary Structure
MKRVVITGASSGLGAALAHSFYEHGYNVLLIGRNEERLKKIAATCEGDWMCADVAKSTAL
CCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEHHHHHHHHH
VYDVTERFGKFDVWVNNAGMAEFDLVTDQSTEVMEETMRVNAVAPMLLSRDVARVLEPEG
EEEHHHHCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VIVNICSQAAKVPTPKSAVYAGSKAALLQFSNALRLELKPRGIHVMTVNPGPIATPFFDR
CEEEEHHHHHCCCCCCHHEECCCHHHEEECCCCEEEEEECCCEEEEEECCCCCCCCCHHC
ADKSGTYAESVQRIMLDPKRLADAIVRGSRKRKREINAPWWMNVGANVYAICPTMFEKLA
CCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCEEEECCCCEEEECHHHHHHHH
KRGFEKK
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]