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The map label for this gene is scpB [H]

Identifier: 229916175

GI number: 229916175

Start: 407594

End: 408178

Strand: Reverse

Name: scpB [H]

Synonym: EAT1b_0444

Alternate gene names: 229916175

Gene position: 408178-407594 (Counterclockwise)

Preceding gene: 229916176

Following gene: 229916174

Centisome position: 13.61

GC content: 52.14

Gene sequence:

>585_bases
TTGCTGTCTTATGAGACGATTATTGAAGGATTGCTGTTCGTCGTCGGTGACGAAGGAATGGAAGTACGCGCGCTCGCCGA
GACGCTTGATATCTCAGAAGCTGCGGCACGAGAACAGCTCAGTAAGCTGGAGGCATCGTTCAAGTCATCGAACCGACCGT
TTCAGCTCATGGAATCGGCAGGTGTCTATAAGCTCGTGACCGTTCCGGACGTCTCCCCGTACATTCAGAAATATGTCGGG
ACGATGGCAGAGCAGGCGCTCTCACGTGCAGCGATGGAGACGCTTGTCATCATCGCCTACAAACAGCCGGTCACACGAGC
GGATATCGAAGAGATTCGCGGAGTCAAAGTCGAACGGGTCATCCATACGTTGTTATCGAAAGGATTGATCGAGTCGGCTG
GCCGCGCGAAGACGATTGGTCGTGCCAAGCTGTATCGTACGACAGAGCACTTCCTCGACCATTTCGGGTTCAACTCACTC
GAGGAACTGCCACCATTAACATTTGAGGATGAACTGACAGACGAAGGCGATTTGTTCTTCGGTCAGGAATCACCGAAGCA
AGAAGAGAGATTGGAGAAGGATTAA

Upstream 100 bases:

>100_bases
CTTTTGGAGCTGATCAAGTTGCGAATCGTCGAAACGAAACAACTCGACCAAGATATTCAAATCTCATTCATTGAAGCGTC
AAAGAAAGGGGATGAAGCGG

Downstream 100 bases:

>100_bases
TCATATGGAACGTTTGCAAAAAGTAATCGCACAAGCGGGGGTCGCCTCGCGTCGGAAAGCGGAAGAAATGATTTTGGATG
GTCGCGTCCGCGTGAACGGA

Product: chromosome segregation and condensation protein, ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MLSYETIIEGLLFVVGDEGMEVRALAETLDISEAAAREQLSKLEASFKSSNRPFQLMESAGVYKLVTVPDVSPYIQKYVG
TMAEQALSRAAMETLVIIAYKQPVTRADIEEIRGVKVERVIHTLLSKGLIESAGRAKTIGRAKLYRTTEHFLDHFGFNSL
EELPPLTFEDELTDEGDLFFGQESPKQEERLEKD

Sequences:

>Translated_194_residues
MLSYETIIEGLLFVVGDEGMEVRALAETLDISEAAAREQLSKLEASFKSSNRPFQLMESAGVYKLVTVPDVSPYIQKYVG
TMAEQALSRAAMETLVIIAYKQPVTRADIEEIRGVKVERVIHTLLSKGLIESAGRAKTIGRAKLYRTTEHFLDHFGFNSL
EELPPLTFEDELTDEGDLFFGQESPKQEERLEKD
>Mature_194_residues
MLSYETIIEGLLFVVGDEGMEVRALAETLDISEAAAREQLSKLEASFKSSNRPFQLMESAGVYKLVTVPDVSPYIQKYVG
TMAEQALSRAAMETLVIIAYKQPVTRADIEEIRGVKVERVIHTLLSKGLIESAGRAKTIGRAKLYRTTEHFLDHFGFNSL
EELPPLTFEDELTDEGDLFFGQESPKQEERLEKD

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 21776; Mature: 21776

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSYETIIEGLLFVVGDEGMEVRALAETLDISEAAAREQLSKLEASFKSSNRPFQLMESA
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
GVYKLVTVPDVSPYIQKYVGTMAEQALSRAAMETLVIIAYKQPVTRADIEEIRGVKVERV
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCHHHHH
IHTLLSKGLIESAGRAKTIGRAKLYRTTEHFLDHFGFNSLEELPPLTFEDELTDEGDLFF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCEEE
GQESPKQEERLEKD
CCCCCCHHHCCCCC
>Mature Secondary Structure
MLSYETIIEGLLFVVGDEGMEVRALAETLDISEAAAREQLSKLEASFKSSNRPFQLMESA
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
GVYKLVTVPDVSPYIQKYVGTMAEQALSRAAMETLVIIAYKQPVTRADIEEIRGVKVERV
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCHHHHH
IHTLLSKGLIESAGRAKTIGRAKLYRTTEHFLDHFGFNSLEELPPLTFEDELTDEGDLFF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCEEE
GQESPKQEERLEKD
CCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA