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The map label for this gene is ykoF [H]

Identifier: 229916068

GI number: 229916068

Start: 302458

End: 303048

Strand: Reverse

Name: ykoF [H]

Synonym: EAT1b_0336

Alternate gene names: 229916068

Gene position: 303048-302458 (Counterclockwise)

Preceding gene: 229916069

Following gene: 229916067

Centisome position: 10.1

GC content: 52.96

Gene sequence:

>591_bases
ATGAATGAATCATGTGGCACGAGTCCGATTGTCGGATTTCGCTTCACGCTTAGCCCGATGACAGATGACTTTGTCGGGAC
GATCAAAGGGGCATTGAAAGGAACGAATATGACGGGTGTGTGGCGACATACGGATGACGTGTCGACCGTGATCCGAGGTC
GCGCCGAGCACGTGTTCGACGTCGCACGGACCGTCTTAAGCCTGGCTTCGGAGGAAGGACGCCATGTCTCGATGAGCGGA
ACCTTCTCTGTCGGATGTCCGGGAGATTCGGCAGGGGATGAGGTGCTCGAGGCACCACCACAACCACTGAATGGAATTTC
AAGAGAACAGTATGTCTCGTCACAGTTCGCGCTTTATCCGATGGGGGCGGAGAACTATATGGATCTCATCTATGATGAAA
TCGAGCAAGCGAAACAGGCGGGTGTCTATAATGACTCCATGCACTACGCGTCAGGCATTCATGGGAACTTGGATGATGTG
TTCTCGTATTACGAGTCGGCGTTCAACCGGACACGCGAGAAGAATCGACACGTCGTCATGACGGTGACGTTCAGTGTGAA
CAGTCCGTCACATGGAGGACAACATGCTTAA

Upstream 100 bases:

>100_bases
AAGTGCGGCACTTTCTCTATGCAAGTTTGTATAGATTTTGTTGCTGCATTCTCATGAATGCGGCTTTTTTTATGCAAACA
TATATAGAGGGGGAAACAAG

Downstream 100 bases:

>100_bases
ATCGTGGAAATTGAAAGAGGTCGTCCTCGTCTCCGTATTGTCTGTCGTCTTTGCCGTCGTCTACTTATTGTTTGTTCATA
TCGGGAACTTATGGGCAGGG

Product: YKOF domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNESCGTSPIVGFRFTLSPMTDDFVGTIKGALKGTNMTGVWRHTDDVSTVIRGRAEHVFDVARTVLSLASEEGRHVSMSG
TFSVGCPGDSAGDEVLEAPPQPLNGISREQYVSSQFALYPMGAENYMDLIYDEIEQAKQAGVYNDSMHYASGIHGNLDDV
FSYYESAFNRTREKNRHVVMTVTFSVNSPSHGGQHA

Sequences:

>Translated_196_residues
MNESCGTSPIVGFRFTLSPMTDDFVGTIKGALKGTNMTGVWRHTDDVSTVIRGRAEHVFDVARTVLSLASEEGRHVSMSG
TFSVGCPGDSAGDEVLEAPPQPLNGISREQYVSSQFALYPMGAENYMDLIYDEIEQAKQAGVYNDSMHYASGIHGNLDDV
FSYYESAFNRTREKNRHVVMTVTFSVNSPSHGGQHA
>Mature_196_residues
MNESCGTSPIVGFRFTLSPMTDDFVGTIKGALKGTNMTGVWRHTDDVSTVIRGRAEHVFDVARTVLSLASEEGRHVSMSG
TFSVGCPGDSAGDEVLEAPPQPLNGISREQYVSSQFALYPMGAENYMDLIYDEIEQAKQAGVYNDSMHYASGIHGNLDDV
FSYYESAFNRTREKNRHVVMTVTFSVNSPSHGGQHA

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Binds thiamine via its HMP moiety [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015835
- InterPro:   IPR016198
- InterPro:   IPR011522 [H]

Pfam domain/function: PF07615 Ykof [H]

EC number: NA

Molecular weight: Translated: 21424; Mature: 21424

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNESCGTSPIVGFRFTLSPMTDDFVGTIKGALKGTNMTGVWRHTDDVSTVIRGRAEHVFD
CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCHHHHHHH
VARTVLSLASEEGRHVSMSGTFSVGCPGDSAGDEVLEAPPQPLNGISREQYVSSQFALYP
HHHHHHHHHHCCCCEEEECCCEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHCCEEEEE
MGAENYMDLIYDEIEQAKQAGVYNDSMHYASGIHGNLDDVFSYYESAFNRTREKNRHVVM
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
TVTFSVNSPSHGGQHA
EEEEEECCCCCCCCCC
>Mature Secondary Structure
MNESCGTSPIVGFRFTLSPMTDDFVGTIKGALKGTNMTGVWRHTDDVSTVIRGRAEHVFD
CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCHHHHHHH
VARTVLSLASEEGRHVSMSGTFSVGCPGDSAGDEVLEAPPQPLNGISREQYVSSQFALYP
HHHHHHHHHHCCCCEEEECCCEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHCCEEEEE
MGAENYMDLIYDEIEQAKQAGVYNDSMHYASGIHGNLDDVFSYYESAFNRTREKNRHVVM
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
TVTFSVNSPSHGGQHA
EEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]