Click here to switch to the map view.

The map label for this gene is yjbM [H]

Identifier: 229916036

GI number: 229916036

Start: 272297

End: 273355

Strand: Direct

Name: yjbM [H]

Synonym: EAT1b_0304

Alternate gene names: 229916036

Gene position: 272297-273355 (Clockwise)

Preceding gene: 229916033

Following gene: 229916037

Centisome position: 9.08

GC content: 46.36

Gene sequence:

>1059_bases
GTGCCAAAACAAGACTTGAATACAATCATGCTTGAATATTTGAATGAAAAAGAAGATTATGAAGCGTTTGCCACAAAGCT
GAAAGCACTCCTCAGTGAATTGTTGACAGAAGCCGGCATCCAGTTTCATTCAATCGTTGCCCGTGCCAAAGAAGCGGACA
GTCTATATGCCAAACTTTCACGTAAACCTTATCAATATCGTTCATTACGAGACGTACAAGACTTGGCCGGGATACGGATC
GTGACGTATTTTCATGACGACGTACGCGCCGTCGCGCAAATCTTGGAAGATGAATTCACCATCGACCGTGAACAGTCCAT
CGACAAGTCGACATTGCTCGATGCCAATGAATTCGGTTATCTTTCCGTTCATTATGTCGTGGAACTGAGTGAGAAACGCC
TTGCGCTCGGGGAATATCGCCGTTTCGCAGAAAAAGAAGCGGAAATTCAAGTCCGCTCCATCTTACAACACGCATGGGCC
GAGATTGAACATGACCTCGGCTACAAAAATCCGAATGCCGTGCCGCCTGAAATTAAACGTAGTTTCAGCCGGGTCGCCGG
ACTCTTGGAGATTGCCGACTCCGAGTTCGTGAACATTCGAAAACAATTGCGGACATTCGAACAGGAGACGGTCGAACAGA
TTCTCGACTCCCCTGAAAAAGTGACCATCACACGTGATAACCTGAATTATTATATCGCAAATGATCAAACGGTTGAGAAG
CTAGATAACGCGATTTTCCAGAGCGAATGGTTGCTCGAGACCGATCTCTCTGCCATCGTCGAACTGACCCGAATGTTCCA
TTACGCCGATATCCGTACGTTTAAAGATTTGAGCGATACGCTCTCCACTTACTTCACACAGGCAGTTCAGTGTGCGACAT
TACTTCCATCTTCCCTCTTGCCGAGACAAGGGATGGGTGTCGTCTATGCCGTTCTCGCTAAATTGTTAGCGGAAGGCGAC
GACCCACAGATTGAATTTTTCTTTAGACGGTTCTATCCAGACTTGAAACATTATGAAGACATCATTCAGCAAATTCGGGT
AAAAGACGAGCCCCTATAA

Upstream 100 bases:

>100_bases
GCATCCAGCCCACCTCTTTCTATTTCGTTCCTTATACATGCTATCATATCGTTTCTAGTGTGTGATGCTATACTATGGAT
AGAGAAAAGGAGTGAGTTCT

Downstream 100 bases:

>100_bases
CTTTACAGACAACATGTTTTTAATGTAGAATGTTTCTATGTTCTGAAGTATATATGAATAATATTATCGCTAGGAGGTAG
TTTCGAGGATGACAACACCC

Product: RelA/SpoT domain protein

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MPKQDLNTIMLEYLNEKEDYEAFATKLKALLSELLTEAGIQFHSIVARAKEADSLYAKLSRKPYQYRSLRDVQDLAGIRI
VTYFHDDVRAVAQILEDEFTIDREQSIDKSTLLDANEFGYLSVHYVVELSEKRLALGEYRRFAEKEAEIQVRSILQHAWA
EIEHDLGYKNPNAVPPEIKRSFSRVAGLLEIADSEFVNIRKQLRTFEQETVEQILDSPEKVTITRDNLNYYIANDQTVEK
LDNAIFQSEWLLETDLSAIVELTRMFHYADIRTFKDLSDTLSTYFTQAVQCATLLPSSLLPRQGMGVVYAVLAKLLAEGD
DPQIEFFFRRFYPDLKHYEDIIQQIRVKDEPL

Sequences:

>Translated_352_residues
MPKQDLNTIMLEYLNEKEDYEAFATKLKALLSELLTEAGIQFHSIVARAKEADSLYAKLSRKPYQYRSLRDVQDLAGIRI
VTYFHDDVRAVAQILEDEFTIDREQSIDKSTLLDANEFGYLSVHYVVELSEKRLALGEYRRFAEKEAEIQVRSILQHAWA
EIEHDLGYKNPNAVPPEIKRSFSRVAGLLEIADSEFVNIRKQLRTFEQETVEQILDSPEKVTITRDNLNYYIANDQTVEK
LDNAIFQSEWLLETDLSAIVELTRMFHYADIRTFKDLSDTLSTYFTQAVQCATLLPSSLLPRQGMGVVYAVLAKLLAEGD
DPQIEFFFRRFYPDLKHYEDIIQQIRVKDEPL
>Mature_351_residues
PKQDLNTIMLEYLNEKEDYEAFATKLKALLSELLTEAGIQFHSIVARAKEADSLYAKLSRKPYQYRSLRDVQDLAGIRIV
TYFHDDVRAVAQILEDEFTIDREQSIDKSTLLDANEFGYLSVHYVVELSEKRLALGEYRRFAEKEAEIQVRSILQHAWAE
IEHDLGYKNPNAVPPEIKRSFSRVAGLLEIADSEFVNIRKQLRTFEQETVEQILDSPEKVTITRDNLNYYIANDQTVEKL
DNAIFQSEWLLETDLSAIVELTRMFHYADIRTFKDLSDTLSTYFTQAVQCATLLPSSLLPRQGMGVVYAVLAKLLAEGDD
PQIEFFFRRFYPDLKHYEDIIQQIRVKDEPL

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 40839; Mature: 40708

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKQDLNTIMLEYLNEKEDYEAFATKLKALLSELLTEAGIQFHSIVARAKEADSLYAKLS
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RKPYQYRSLRDVQDLAGIRIVTYFHDDVRAVAQILEDEFTIDREQSIDKSTLLDANEFGY
CCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCCCCCCCCC
LSVHYVVELSEKRLALGEYRRFAEKEAEIQVRSILQHAWAEIEHDLGYKNPNAVPPEIKR
EEEHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
SFSRVAGLLEIADSEFVNIRKQLRTFEQETVEQILDSPEKVTITRDNLNYYIANDQTVEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCHHHHH
LDNAIFQSEWLLETDLSAIVELTRMFHYADIRTFKDLSDTLSTYFTQAVQCATLLPSSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
PRQGMGVVYAVLAKLLAEGDDPQIEFFFRRFYPDLKHYEDIIQQIRVKDEPL
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PKQDLNTIMLEYLNEKEDYEAFATKLKALLSELLTEAGIQFHSIVARAKEADSLYAKLS
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RKPYQYRSLRDVQDLAGIRIVTYFHDDVRAVAQILEDEFTIDREQSIDKSTLLDANEFGY
CCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCCCCCCCCC
LSVHYVVELSEKRLALGEYRRFAEKEAEIQVRSILQHAWAEIEHDLGYKNPNAVPPEIKR
EEEHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
SFSRVAGLLEIADSEFVNIRKQLRTFEQETVEQILDSPEKVTITRDNLNYYIANDQTVEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCHHHHH
LDNAIFQSEWLLETDLSAIVELTRMFHYADIRTFKDLSDTLSTYFTQAVQCATLLPSSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
PRQGMGVVYAVLAKLLAEGDDPQIEFFFRRFYPDLKHYEDIIQQIRVKDEPL
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]