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The map label for this gene is yfjD [C]

Identifier: 229587061

GI number: 229587061

Start: 1011230

End: 1012504

Strand: Direct

Name: yfjD [C]

Synonym: RAF_ORF0984

Alternate gene names: 229587061

Gene position: 1011230-1012504 (Clockwise)

Preceding gene: 229587060

Following gene: 229587062

Centisome position: 79.09

GC content: 32.63

Gene sequence:

>1275_bases
ATGACTACCATACTTGTGATCGTTATTATAATAATGATCGCCTTATCTGCCTTATTTGCCGCTACCGAAACTGCTATTAC
CGCTTCTTCCCCAGGGAAGATTCATAAGCTTAAAATCGCCGGTAATAAGCGTGCTAAAACAATTTTAGAGGTTCTTAAGA
AAAAAGAAAAGGTCATAGGAACTTTATTAATAGGTAATAGTTTAATCAATACTGTTTGTACCACTATTGCTACTACTCTC
TTTATTAGCTTTCTTGGAGATAATGGACCCATTGTTGCTTCCGGCGTTATGGCTTTTATAATTATTGTTTTTGCCGAAGT
AGTACCGAAAGCAATAGCCGTTGCTAAACCTGAACAATTAACATTAAAAATGGCTTCAACTATTGTAATATTTTTAAAGC
TTTTCAAACCTATTAATATTGCTCTTGATTACATTACAAAAATATTTTGCTTCATATTTCGTATTAATTTAAATCCTCAA
ATATCAGGAACGGAAGAAGTAAGAGGCGTGATTGAGCATTACCATCAAGAAGGCGGAGTTTATAAATCTGATCGTAATAT
GCTCGGCGGAATATTAGATATACGTAATATGACGGTATCGGAAATTATGACTCACAGAAGTAGTATTATAGCCCTTAATA
TCGACCTACCTCATGAAGTGATAATTAAAACTTTATTATCGGGTGCTCATACACGTATACCTTTGTGGCAAGATAATAGA
GATAATATAATAGGGATTCTCAACCTAAAAGATTTGCTTAAAGCATTATACGAAAATAATAATGATGCAAAAAAAGTTGA
TATTAATAAACTTCTAACCCCACCTTGGTTTATCCCTGAGAATGCACTTGTAGTAGACCAGCTACATGCATTTAGAAAAC
GTAATAATCATTTTGCTTGTGTTGTAGATGAGTATGGTACTCTACTAGGTATTATTACTCTTGAAGATGTTATAGAAGAA
ATCGTAGGACCCATTACTGATGAACATGATAGACTTAATAATGAAATTATCAAGAAGTCTAATACCGAGTTCATTATAAA
AGGAACTACGACTATTAGAGATATTAACCGAGAACTTGATTGGAATTTATCGGATGAAGATGCAAACACTATAGCAGGAT
TAATAATCCATAAAATTGCTAGAATTCCAAATCAAGGGGAAGTAATTGAAATATTTAATTTAAAGGTAATTATTTTAAAG
AAAATTGCCAATAAGATTGATAGCGTAAAAATTACCGTATTACCTACTACCGAGGCAACAATAAGCAGTGAGTGA

Upstream 100 bases:

>100_bases
CAAAAGATACTGAAAGGAGTCGTTGATAACAAAAAAACATTAGGCAAAATCTATAATTACTAATATAATTATTTATAGTT
AATTTATATTTTAACAAAGA

Downstream 100 bases:

>100_bases
AATCGGTAATTTTTTACTACTAACAACGATGTACTTGTCGGTTATCGGTTTGTCTTTTGTCTTTTATGTCATTCCTGCGC
AAGCGGGAATCCATAAAAAA

Product: Hemolysin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MTTILVIVIIIMIALSALFAATETAITASSPGKIHKLKIAGNKRAKTILEVLKKKEKVIGTLLIGNSLINTVCTTIATTL
FISFLGDNGPIVASGVMAFIIIVFAEVVPKAIAVAKPEQLTLKMASTIVIFLKLFKPINIALDYITKIFCFIFRINLNPQ
ISGTEEVRGVIEHYHQEGGVYKSDRNMLGGILDIRNMTVSEIMTHRSSIIALNIDLPHEVIIKTLLSGAHTRIPLWQDNR
DNIIGILNLKDLLKALYENNNDAKKVDINKLLTPPWFIPENALVVDQLHAFRKRNNHFACVVDEYGTLLGIITLEDVIEE
IVGPITDEHDRLNNEIIKKSNTEFIIKGTTTIRDINRELDWNLSDEDANTIAGLIIHKIARIPNQGEVIEIFNLKVIILK
KIANKIDSVKITVLPTTEATISSE

Sequences:

>Translated_424_residues
MTTILVIVIIIMIALSALFAATETAITASSPGKIHKLKIAGNKRAKTILEVLKKKEKVIGTLLIGNSLINTVCTTIATTL
FISFLGDNGPIVASGVMAFIIIVFAEVVPKAIAVAKPEQLTLKMASTIVIFLKLFKPINIALDYITKIFCFIFRINLNPQ
ISGTEEVRGVIEHYHQEGGVYKSDRNMLGGILDIRNMTVSEIMTHRSSIIALNIDLPHEVIIKTLLSGAHTRIPLWQDNR
DNIIGILNLKDLLKALYENNNDAKKVDINKLLTPPWFIPENALVVDQLHAFRKRNNHFACVVDEYGTLLGIITLEDVIEE
IVGPITDEHDRLNNEIIKKSNTEFIIKGTTTIRDINRELDWNLSDEDANTIAGLIIHKIARIPNQGEVIEIFNLKVIILK
KIANKIDSVKITVLPTTEATISSE
>Mature_423_residues
TTILVIVIIIMIALSALFAATETAITASSPGKIHKLKIAGNKRAKTILEVLKKKEKVIGTLLIGNSLINTVCTTIATTLF
ISFLGDNGPIVASGVMAFIIIVFAEVVPKAIAVAKPEQLTLKMASTIVIFLKLFKPINIALDYITKIFCFIFRINLNPQI
SGTEEVRGVIEHYHQEGGVYKSDRNMLGGILDIRNMTVSEIMTHRSSIIALNIDLPHEVIIKTLLSGAHTRIPLWQDNRD
NIIGILNLKDLLKALYENNNDAKKVDINKLLTPPWFIPENALVVDQLHAFRKRNNHFACVVDEYGTLLGIITLEDVIEEI
VGPITDEHDRLNNEIIKKSNTEFIIKGTTTIRDINRELDWNLSDEDANTIAGLIIHKIARIPNQGEVIEIFNLKVIILKK
IANKIDSVKITVLPTTEATISSE

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=387, Percent_Identity=24.2894056847545, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI94681046, Length=375, Percent_Identity=26.1333333333333, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI40068055, Length=355, Percent_Identity=25.9154929577465, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI40068053, Length=355, Percent_Identity=25.9154929577465, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI40068051, Length=258, Percent_Identity=23.6434108527132, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI145693175, Length=408, Percent_Identity=30.1470588235294, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1786879, Length=237, Percent_Identity=31.6455696202532, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1790664, Length=438, Percent_Identity=22.6027397260274, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87082033, Length=233, Percent_Identity=28.3261802575107, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1788119, Length=237, Percent_Identity=30.379746835443, Blast_Score=99, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17539402, Length=355, Percent_Identity=23.6619718309859, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324512, Length=349, Percent_Identity=24.0687679083095, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47084; Mature: 46953

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTILVIVIIIMIALSALFAATETAITASSPGKIHKLKIAGNKRAKTILEVLKKKEKVIG
CHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
TLLIGNSLINTVCTTIATTLFISFLGDNGPIVASGVMAFIIIVFAEVVPKAIAVAKPEQL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
TLKMASTIVIFLKLFKPINIALDYITKIFCFIFRINLNPQISGTEEVRGVIEHYHQEGGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCC
YKSDRNMLGGILDIRNMTVSEIMTHRSSIIALNIDLPHEVIIKTLLSGAHTRIPLWQDNR
EECCCHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCEECCC
DNIIGILNLKDLLKALYENNNDAKKVDINKLLTPPWFIPENALVVDQLHAFRKRNNHFAC
CCEEEEECHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
VVDEYGTLLGIITLEDVIEEIVGPITDEHDRLNNEIIKKSNTEFIIKGTTTIRDINRELD
EEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCC
WNLSDEDANTIAGLIIHKIARIPNQGEVIEIFNLKVIILKKIANKIDSVKITVLPTTEAT
CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEEEEECCCCC
ISSE
CCCC
>Mature Secondary Structure 
TTILVIVIIIMIALSALFAATETAITASSPGKIHKLKIAGNKRAKTILEVLKKKEKVIG
HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
TLLIGNSLINTVCTTIATTLFISFLGDNGPIVASGVMAFIIIVFAEVVPKAIAVAKPEQL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
TLKMASTIVIFLKLFKPINIALDYITKIFCFIFRINLNPQISGTEEVRGVIEHYHQEGGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCC
YKSDRNMLGGILDIRNMTVSEIMTHRSSIIALNIDLPHEVIIKTLLSGAHTRIPLWQDNR
EECCCHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCEECCC
DNIIGILNLKDLLKALYENNNDAKKVDINKLLTPPWFIPENALVVDQLHAFRKRNNHFAC
CCEEEEECHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
VVDEYGTLLGIITLEDVIEEIVGPITDEHDRLNNEIIKKSNTEFIIKGTTTIRDINRELD
EEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCC
WNLSDEDANTIAGLIIHKIARIPNQGEVIEIFNLKVIILKKIANKIDSVKITVLPTTEAT
CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHCCEEEEEEECCCCC
ISSE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]